Q12522 | SWISS-MODEL Repository

Q12522 (IF6_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

Eukaryotic translation initiation factor 6 UniProtKB InterPro STRING Interactive Modelling

245 aa; Sequence (Fasta) ; 11 identical sequences

It is possible new templates exist for this target since these models were created.

Available Structures

67 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 A…	7btb SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40078; P40693; P49166; P49167; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q08746; Q12080; Q12690;	1-244	2×GTP; 2×MG; 3×ZN;
Assess
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain	7uqz SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P47019; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12690;	1-244	81×MG; 3×B3P; 5×ZN; 2×GDP; 1×K;
Assess
State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model	7u0h SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P26784; P33201; P36105; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q12080; Q12690;	1-244	1×MG; 4×ZN;
Assess
Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae	7ohq SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q08746; Q12080; Q12690;	1-244	2×MG; 3×ZN;
Assess
Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae	7oh3 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P40010; P40078; P49166; P49167; P53188; P53742; P87262; Q02326; Q02753; Q02892; Q07915; Q08746; Q12690;	1-244	2×MG; 3×ZN;
Assess
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state	7uoo SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P47019; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12690;	1-244	81×MG; 3×B3P; 5×ZN; 1×GDP; 1×GTP; 1×K;
Assess
Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors	6ft6 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38801; P40010; P40078; P47047; P49166; P49167; P53188; P53261; P53742; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12149; Q12690;	1-244	4×ZN; 2×GTP; 2×MG;
Assess
Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 A…	7bt6 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P40078; P49166; P49167; P53742; P87262; Q02326; Q02753; Q02892; Q07915; Q08746; Q12690;	1-244	2×GTP; 2×MG; 3×ZN;
Assess
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppr…	7v08 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P47019; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12690;	1-244	81×MG; 3×B3P; 5×ZN; 2×GDP; 1×K;
Assess
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strai…	7uqb SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P47019; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12690;	1-244	3×B3P; 81×MG; 5×ZN; 2×GDP; 1×ALF; 1×K;
Assess
Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 2…	6m62 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12690;	1-244	4×ZN; 2×GTP; 2×MG;
Assess
Cryo-em structure of eukaryotic pre-60S ribosomal subunits	3jct SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12690;	1-244	4×ZN; 2×GTP; 2×MG;
Assess
pre-60S State NE1 (TAP-Flag-Nop53)	6ylx SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P26784; P33201; P36105; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q12080; Q12690;	1-244
Assess
Rix1-Rea1 pre-60S particle - full composite structure	6ylh SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P38061; P38202; P38803; P38883; P40010; P40078; P47019; P49166; P49167; P53188; P53313; P53742; P53877; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q12019; Q12690;	2-244	4×ZN; 2×GTP; 2×MG;
Assess
Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)	6ylg SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P38061; P38202; P38803; P40010; P40078; P47019; P49166; P49167; P53188; P53313; P53742; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q12690;	2-244	4×ZN; 2×GTP; 2×MG;
Assess
Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit	6n8j SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P33201; P36105; P38061; P38202; P40078; P49166; P49167; P53742; P87262; Q02326; Q02753; Q02892; Q07915; Q08004; Q12690;	2-243	2×GTP; 2×MG;
Assess
Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit	6n8k SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P33201; P36105; P38061; P38202; P38861; P49166; P49167; P87262; Q02326; Q02753; Q02892; Q07915; Q08004; Q12690;	2-243	1×GTP; 1×MG;
Assess
NPC-trapped pre-60S particle	8hfr SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P33201; P34232; P36105; P38061; P38202; P38861; P39715; P40078; P47019; P49166; P49167; P53742; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08687; Q12690; Q99257;	2-243	237×MG;
Assess
Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit	6n8n SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P49166; P49167; P53145; P87262; Q02256; Q02326; Q02753; Q12690;	1-237
Assess
Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit	6n8m SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P49166; P49167; P87262; Q02256; Q02326; Q02753; Q12690;	1-237
Assess
Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit	6n8o SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P41805; P49166; P49167; P53145; P87262; Q02256; Q02326; Q02753; Q12690;	1-237
Assess
Structure of pre-60S particle bound to DRG1(AFG2).	7z34 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P32794; P33201; P36105; P38061; P38202; P38861; P40078; P49166; P49167; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q12690;	2-229	11×AGS; 1×MG;
Assess
Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922	7ug6 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P40010; P40078; P47019; P49166; P49167; P53742; P87262; Q02326; Q02753; Q02892; Q07915; Q08004; Q08746; Q12690;	1-228	1×GDP; 1×MG;
Assess
Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1	5h4p SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P49166; P49167; P87262; Q02326; Q02753; Q06709; Q12690;	1-227
Assess
pre-60S State NE2 (TAP-Flag-Nop53)	6yly SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26784; P33201; P36105; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q08004; Q12080; Q12690;	2-228	3×ZN;
Assess
Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)	5z3g SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P35178; P36049; P36105; P38061; P38779; P38805; P40693; P49166; P53136; P53261; P53927; Q02326; Q03532; Q08235; Q12690;	1-226
Assess
Yeast nucleolar pre-60S ribosomal subunit (state 2)	6c0f SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P05737; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P35178; P36080; P36105; P38061; P38779; P38789; P38805; P40007; P40693; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q06511; Q07915; Q08235; Q12690;	1-226	3×ZN;
Assess
Yeast RQC complex in state F	8agt SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q04781; Q12532; Q12690;	1-225	13×MG; 7×ZN;
Assess
Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down…	7oht SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P05737; P05738; P05744; P0C0W9; P0CX23; P0CX41; P0CX49; P10664; P14126; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P40078; P53742; Q02326; Q02753; Q02892; Q07915; Q08746;	1-225	2×MG; 1×ZN;
Assess
State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pr…	6em5 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O14455; P04456; P05737; P05738; P05740; P05743; P05744; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P10962; P14120; P14126; P17076; P25582; P26784; P33201; P35178; P36049; P36105; P38061; P38202; P38779; P38805; P40007; P40010; P40078; P40693; P40991; P49166; P49167; P53136; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12690;	1-225
Assess
Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit	6n8l SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P33201; P36105; P38061; P38202; P38861; P49166; P49167; P87262; Q02326; Q02753; Q02892; Q07915; Q08004; Q12690;	2-226
Assess
Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae	7ohr SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P26784; P33201; P36049; P36105; P38061; P38779; P40007; P40010; P40078; P40693; P40991; P49166; P49167; P53261; P53927; P87262; Q02326; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12690;	1-225	1×ZN;
Assess
Nog1-TAP associated immature ribosomal particle population F from S. cerevisiae	7ohs SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P33201; P35178; P36105; P38061; P38779; P38805; P40007; P40078; P40693; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q07915; Q08235; Q12690;	1-225	2×ZN;
Assess
Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut dow…	7ohp SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P14126; P17076; P26784; P33201; P36105; P38061; P38779; P40007; P40078; P40693; P49166; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q12690;	1-225	1×ZN;
Assess
State B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pr…	6em4 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O14455; P05737; P05740; P05743; P05744; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P35178; P36049; P36105; P38061; P38779; P38805; P40007; P40693; P49166; P53136; P53261; P53927; Q02326; Q03532; Q04660; Q07915; Q08235; Q12690;	1-225
Assess
Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut dow…	7ohy SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P05737; P05738; P05740; P05743; P05744; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P14126; P17076; P26784; P33201; P36105; P38061; P40078; P49166; Q02326; Q02892; Q07915; Q12690;	1-225	2×ZN;
Assess
State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model	7r7a SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX43; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P25808; P26784; P33201; P36049; P36105; P38061; P38202; P38779; P39744; P40007; P40010; P40078; P40693; P40991; P43586; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12690;	1-225	2×ZN;
Assess
Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut dow…	7ohw SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P33201; P35178; P36049; P36105; P38061; P38779; P38805; P40007; P40078; P40693; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q08235; Q12690;	1-225	1×ZN;
Assess
Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut dow…	7ohx SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P33201; P35178; P36105; P38061; P38779; P38805; P40007; P40693; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q07915; Q12690;	1-225	2×ZN;
Assess
State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes	6elz SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P26784; P33201; P36049; P36105; P38061; P38202; P38779; P40007; P40010; P40078; P40693; P40991; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12690;	1-225	1×ZN;
Assess
Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down…	7ohu SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P14126; P17076; P26784; P33201; P36105; P38061; P40078; P49166; Q02326; Q02892; Q07915; Q12690;	1-225	2×ZN;
Assess
State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes	6em1 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O14455; P05737; P05738; P05740; P05743; P05744; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P33201; P35178; P36049; P36105; P38061; P38202; P38779; P38805; P40007; P40010; P40078; P40693; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q07915; Q08235; Q12690;	1-225	2×ZN;
Assess
Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down…	7ohv SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14126; P17076; P25582; P26784; P33201; P36049; P36105; P38061; P38779; P40007; P40078; P40693; P49166; P49167; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q07915; Q08235; Q12024; Q12690;	1-225	1×ZN;
Assess
State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model	7nac SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX43; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P25808; P26784; P33201; P36049; P36105; P38061; P38202; P38779; P39744; P40007; P40010; P40078; P40693; P40991; P43586; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04031; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12690;	1-225	2×ZN; 1×SAH;
Assess
Yeast RQC complex in state E	8agu SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX54; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q04781; Q12532; Q12690;	1-225	13×MG; 7×ZN; 1×SPD;
Assess
Yeast RQC complex in state G	8aaf SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q04781; Q12532; Q12690;	1-225	13×MG; 7×ZN; 1×SPD;
Assess
Yeast RQC complex in state H	8agv SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX54; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q04781; Q12532; Q12690;	1-225	13×MG; 7×ZN;
Assess
Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position	8agz SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q04781; Q12532; Q12690;	1-225	13×MG; 7×ZN; 1×SPD;
Assess
Yeast RQC complex in state D	8agw SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q04781; Q12532; Q12690;	1-225	13×MG; 7×ZN; 1×SPD;
Assess
Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae	7of1 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26784; P33201; P36105; P38061; P40078; P49166; P49167; P53742; P87262; Q02326; Q02753; Q02892; Q07915; Q12690;	2-225	2×MG;
Assess
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	6qt0 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26785; P36105; P38061; P41805; P49166; P49167; P87262; Q02326; Q02753; Q06709; Q12690;	1-224	5×ZN;
Assess
Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)	6r84 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P40024; P41805; P49166; P49167; P87262; Q02326; Q02753; Q04311; Q12690; Q3E757;	1-224	1×ZN;
Assess
CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE	5jcs SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P38061; P49166; P49167; P53313; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q12019; Q12690;	1-224
Assess
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	6qtz SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26785; P36105; P38061; P38861; P41805; P49166; P49167; P53145; P87262; Q02326; Q02753; Q06709; Q12690;	1-224	7×ZN;
Assess
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	6rzz SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26785; P36105; P38061; P38344; P38861; P49166; P49167; P53145; P87262; Q02256; Q02326; Q02753; Q03862; Q12690;	1-224	10×ZN;
Assess
Arx1 pre-60S particle.	4v7f SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P38061; P40693; P49166; P49167; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q12690;	1-224
Assess
Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)	6r87 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02326; Q02753; Q04311; Q12690; Q3E757;	1-224	1×ZN;
Assess
Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA	7zs5 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02326; Q02753; Q12690; Q3E757;	1-224	23×UNK; 1×MG;
Assess
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	6qik SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26785; P36105; P38061; P38861; P49166; P49167; P53145; P87262; Q02326; Q02753; Q06709; Q12690;	1-224	7×ZN;
Assess
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	6ri5 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26785; P36105; P38061; P38861; P41805; P49166; P49167; P53145; P87262; Q02326; Q02753; Q06709; Q12690;	1-224	7×ZN;
Assess
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	6s05 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26785; P36105; P38061; P38861; P49166; P49167; P53145; P87262; Q02256; Q02326; Q02753; Q06709; Q12690;	1-224	8×ZN;
Assess
Yeast Vms1-60S ribosomal subunit complex (post-state)	6r86 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02326; Q02753; Q04311; Q12690; Q3E757;	1-224	1×ZN;
Assess
Structure of late pre-60S ribosomal subunits with nuclear export factor Arx1 bound at the peptide e…	3j2i SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q9UQ80;	1-224
Assess
Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis…	5t62 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P41805; P49166; P49167; P53145; P87262; Q02326; Q02753; Q12690;	1-224	160×MG; 2×K; 1×GNP;
Assess
Mechanism of eIF6s anti-association activity	2x7n SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04449; P0CX41;	1-224
Assess
State E2 nucleolar 60S ribosomal biogenesis intermediate - Spb1-MTD local model	7naf SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P05749; P0C2H8; P0CX41; P0CX82; P14120; P14126; P25582; P38202; P39744; P40010; P40991; Q02892; Q04031; Q07915;	1-218	1×SAH;
Assess
CRYSTAL STRUCTURE OF S.CEREVISIAE EIF6	1g62 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	1-224
Assess

1 SWISS-MODEL model

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
8i9z.1.P	monomer	0.81	1-245		75.51
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

Q12522 (IF6_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

Eukaryotic translation initiation factor 6 UniProtKBInterProSTRINGInteractive Modelling

Available Structures

67 Experimental Structures

1 SWISS-MODEL model

Alignments

Background

Resolution

Eukaryotic translation initiation factor 6 UniProtKB InterPro STRING Interactive Modelling