Q7KZ85 (SPT6H_HUMAN) Homo sapiens (Human)
Transcription elongation factor SPT6 UniProtKBInterProSTRINGInteractive Modelling
Available Structures
19 Experimental Structures
| Description | PDB ID | Oligo-state | Range | Seq id (%) | Ligands | |
|---|---|---|---|---|---|---|
| RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-SETD2-FACT nucleosome upstream |
Heteromer A0A0B8RVL1; A0A310TTQ1; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A7M4DUC2; A0A8D0TE17; A0A8D1AQR7; A0A8W4F9W9; I3LCH3; I3LSI7; O00267; P02281; P06897; P23193; P60899; P62799; P63272; Q08945; Q6P1J9; Q6PD62; Q8N7H5; Q8WVC0; Q92541; Q96ST2; Q9BYW2; Q9GZS3; Q9Y5B9; | 100.0 | 9×ZN; 1×MG; | |||
| Structure of complete, activated transcription complex Pol II-DSIF-PAF-SPT6 uncovers allosteric elo… |
Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; P60899; P63272; Q6P1J9; Q6PD62; Q8N7H5; Q8WVC0; Q92541; Q9GZS3; | 100.0 | 9×ZN; 1×MG; | |||
| Pol II-DSIF-SPT6-PAF1c-TFIIS-nucleosome complex (stalled at +38) |
Heteromer A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D1GCS3; O00267; P02281; P23193; P62799; P63272; P84233; Q6AZJ8; Q6P1J9; Q6PD62; Q8N7H5; Q8WVC0; Q92541; Q9GZS3; | 100.0 | 9×ZN; 1×MG; | |||
| Structure of activated transcription complex Pol II-DSIF-PAF-SPT6 |
Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LJR4; I3LSI7; O00267; P60899; P63272; Q6PD62; Q9GZS3; | 99.28 | 9×ZN; 1×MG; | |||
| Structure of mammalian Pol II-DSIF-SPT6-PAF1-TFIIS-hexasome elongation complex |
Heteromer A0A287ADR4; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VYD0; A0A7M4DUC2; A0A8D0JYF1; A0A8J1LZU9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; P60899; P62799; P63272; P84233; Q6AZJ8; Q6P1J9; Q6PD62; Q8N7H5; Q8WVC0; Q92541; Q9GZS3; | 100 | 9×ZN; 1×MG; | |||
| RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-SETD2-nucleosome, bp +27 |
Heteromer A0A0B8RVL1; A0A310TTQ1; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A7M4DUC2; A0A8D0TE17; A0A8D1AQR7; A0A8W4F9W9; I3LCH3; I3LSI7; O00267; P02281; P06897; P23193; P60899; P62799; P63272; Q6P1J9; Q6PD62; Q8N7H5; Q8WVC0; Q92541; Q96ST2; Q9BYW2; Q9GZS3; | 100.0 | 12×ZN; 1×MG; | |||
| RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-SETD2-nucleosome, 30 bp upstream |
Heteromer A0A0B8RVL1; A0A310TTQ1; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A7M4DUC2; A0A8D0TE17; A0A8D1AQR7; A0A8W4F9W9; I3LCH3; I3LSI7; O00267; P02281; P06897; P23193; P60899; P62799; P63272; Q6P1J9; Q6PD62; Q8N7H5; Q8WVC0; Q92541; Q96ST2; Q9BYW2; Q9GZS3; | 100.0 | 9×ZN; 1×MG; | |||
| Pol II-DSIF-SPT6-PAF1c-TFIIS complex with rewrapped nucleosome |
Heteromer A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D1GCS3; O00267; P02281; P23193; P62799; P84233; Q6AZJ8; Q6P1J9; Q6PD62; Q8N7H5; Q8WVC0; Q92541; Q9GZS3; | 100.0 | 8×ZN; 1×MG; | |||
| RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-hexasome, bp +27 |
Heteromer A0A0B8RVL1; A0A310TTQ1; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A7M4DUC2; A0A8D0TE17; A0A8D1AQR7; A0A8W4F9W9; I3LCH3; I3LSI7; O00267; P02281; P06897; P23193; P60899; P62799; P63272; Q6P1J9; Q6PD62; Q8N7H5; Q8WVC0; Q92541; Q96ST2; Q9GZS3; | 100.0 | 9×ZN; 1×MG; | |||
| RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-nucleosome, bp +27 |
Heteromer A0A0B8RVL1; A0A310TTQ1; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A7M4DUC2; A0A8D0TE17; A0A8D1AQR7; A0A8W4F9W9; I3LCH3; I3LSI7; O00267; P02281; P06897; P23193; P60899; P62799; P63272; Q6P1J9; Q6PD62; Q8N7H5; Q8WVC0; Q92541; Q96ST2; Q9GZS3; | 100.0 | 9×ZN; 1×MG; | |||
| RNA polymerase II elongation complex with DSIF, SPT6, and ELOF1 transcribing genomic DNA extracted … |
Heteromer O00267; O15514; P19387; P19388; P24928; P30876; P36954; P52434; P52435; P53803; P60002; P61218; P62487; P62875; P63272; | 100.0 | 10×ZN; 1×MG; | |||
| Structure of the transcribing Pol II-DSIF-SPT6-U1 snRNP complex |
Heteromer A0A0B8RVL1; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VM56; A0A4X1VYD0; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; I3LSI7; O00267; P08621; P09012; P60899; P62304; P62306; P62308; P62314; P62316; P62318; Q4R941; Q66K91; | 100.0 | 8×ZN; 1×MG; | |||
| Structure of the mammalian Pol II-SPT6 complex (composite structure, Structure 4) |
Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P60899; | 100.0 | 1×MG; 8×ZN; | |||
| Structure of the mammalian Pol II-SPT6-Elongin complex, lacking ELOA latch (composite structure, st… |
Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P60899; Q14241; Q15369; Q15370; | 100.0 | 1×MG; 8×ZN; | |||
| Pol II-CSB-CRL4CSA-UVSSA-SPT6-PAF (Structure 5) |
Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P11414; P60899; P62878; Q03468; Q13216; Q13619; Q16531; Q2YD98; Q6P1J9; Q6PD62; Q8N7H5; Q8WVC0; Q9GZS3; | 100.0 | 8×ZN; 1×MG; | |||
| Pol II-CSB-CSA-DDB1-UVSSA-PAF-SPT6 (Structure 3) |
Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P11414; P60899; Q03468; Q13216; Q16531; Q2YD98; Q6P1J9; Q6PD62; Q8N7H5; Q8WVC0; Q9GZS3; | 100.0 | 8×ZN; 1×MG; | |||
| Pol II-CSB-CRL4CSA-UVSSA-SPT6-PAF (Structure 4) |
Heteromer A0A4X1TRS6; A0A4X1VEK9; A0A4X1VM56; A0A4X1VYD0; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P11414; P60899; P62878; Q03468; Q13216; Q13619; Q16531; Q2YD98; Q6P1J9; Q6PD62; Q8N7H5; Q8WVC0; Q9GZS3; | 100.0 | 8×ZN; 1×MG; | |||
| Structure of the mammalian Pol II-SPT6-Elongin complex, Structure 1 |
Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A8D1DPV6; A0A8W4F9W9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P60899; Q14241; Q15369; Q15370; | 100.0 | 1×MG; 8×ZN; | |||
| Structure of H. sapiens SPT6 tandem SH2 domain | monomer | 100 | ||||
2 SWISS-MODEL models
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 9eh2.1.M | monomer | 0.74 | 100.00 | |||
| 4h34.1.A | monomer | 0.55 | 20.23 | |||
3 SWISS-MODEL models built on isoform sequence
| Isoform | Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|---|
| Isoform 2 | 9eh2.1.M | monomer | 0.64 | 99.61 | |||
| Isoform 2 | 5ibs.1.A | monomer | 0.53 | 19.77 | |||
| Isoform 3 | 9eh2.1.M | monomer | 0.65 | 97.32 | |||