Q913V3 (POLG_HCVR6) Hepatitis C virus genotype 1b (isolate HCR6) (HCV)
Genome polyprotein UniProtKBInterProInteractive Modelling
3010 aa; Sequence (Fasta)
Molecule Processing
| Core protein p21 | |
| Core protein p19 | |
| Envelope glycoprotein E1 | |
| Envelope glycoprotein E2 | |
| p7 | |
| Protease NS2-3 | |
| Serine protease NS3 | |
| Non-structural protein 4A | |
| Non-structural protein 4B | |
| Non-structural protein 5A | |
| RNA-directed RNA polymerase |
It is possible new templates exist for this target since these models were created.
Sequence Features
| 952 | For protease NS2-3 activity; shared with dimeric partner | ||
| 972 | For protease NS2-3 activity; shared with dimeric partner | ||
| 993 | For protease NS2-3 activity; shared with dimeric partner | ||
| 1083 | Charge relay system; for serine protease NS3 activity | ||
| 1107 | Charge relay system; for serine protease NS3 activity | ||
| 1165 | Charge relay system; for serine protease NS3 activity | ||
| 1123 | Zinc | ||
| 1125 | Zinc | ||
| 1171 | Zinc | ||
| 1175 | Zinc | ||
| 2011 | Zinc | ||
| 2029 | Zinc | ||
| 2031 | Zinc | ||
| 2052 | Zinc | ||
| 169-189 | Helical | ||
| 359-379 | Helical | ||
| 726-746 | Helical | ||
| 758-778 | Helical | ||
| 783-803 | Helical | ||
| 814-834 | Helical | ||
| 882-902 | Helical | ||
| 929-949 | Helical | ||
| 1658-1678 | Helical | ||
| 1806-1826 | Helical | ||
| 1829-1849 | Helical | ||
| 1851-1871 | Helical | ||
| 1882-1902 | Helical | ||
| 1973-2002 | |||
| 2990-3010 | Helical | ||
| 1230-1237 | ATP | ||
| 177-178 | Cleavage; by host signal peptidase | ||
| 191-192 | Cleavage; by host signal peptidase | ||
| 383-384 | Cleavage; by host signal peptidase | ||
| 746-747 | Cleavage; by host signal peptidase | ||
| 809-810 | Cleavage; by host signal peptidase | ||
| 1026-1027 | Cleavage; by protease NS2-3 | ||
| 1657-1658 | Cleavage; by serine protease NS3 | ||
| 1711-1712 | Cleavage; by serine protease NS3 | ||
| 1972-1973 | Cleavage; by serine protease NS3 | ||
| 2419-2420 | Cleavage; by serine protease NS3 | ||
| 2-115 | Hepatitis C virus core protein, N-terminal IPR002522PF01543 | ||
| 116-190 | Hepatitis C virus core protein, C-terminal IPR002521PF01542 | ||
| 193-382 | Hepatitis C virus envelope glycoprotein E1 IPR002519PF01539 | ||
| 387-729 | Hepatitis C virus non-structural protein E2/NS1 IPR002531PF01560 | ||
| 812-1005 | Hepatitis C virus non-structural protein NS2 IPR002518PF01538 | ||
| 1056-1203 | Peptidase S29, hepatitis C virus NS3 protease IPR004109PF02907 | ||
| 1294-1355 | DEAD box, Flavivirus IPR011492PF07652 | ||
| 1658-1711 | Hepatitis C virus non-structural protein NS4a IPR000745PF01006 | ||
| 1728-1921 | Hepatitis C virus non-structural protein NS4b IPR001490PF01001 | ||
| 1974-1996 | Hepatitis C virus non-structural 5a protein IPR002868PF01506 | ||
| 2006-2067 | NS5A domain 1a IPR013192PF08300 | ||
| 2068-2168 | Hepatitis C virus non-structural 5a, 1B domain IPR013193PF08301 | ||
| 2179-2419 | Hepatitus C virus, NS5a, C-terminal IPR024350PF12941 | ||
| 2422-2932 | RNA dependent RNA polymerase, hepatitis C virus IPR002166PF00998 |
Sequence Alignments
Envelope glycoprotein E2 384-746; PRO_0000278758
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) | Download | Assess |
|---|---|---|---|---|---|---|---|
| monomer | 1×BR; | -0.69 | 6mei.1.A | 85.11 |
Serine protease NS3 1027-1657; PRO_0000278761
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) | Download | Assess |
|---|---|---|---|---|---|---|---|
| monomer | 2×MG; | -0.21 | 5wdx.1.A | 78.61 |
RNA-directed RNA polymerase 2420-3010; PRO_0000278765
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) | Download | Assess |
|---|---|---|---|---|---|---|---|
| monomer | 1×5X; | -0.23 | 2ax0.1.A | 94.91 |