Q913V3 (POLG_HCVR6) Hepatitis C virus genotype 1b (isolate HCR6) (HCV)

Genome polyprotein UniProtKBInterProInteractive Modelling

3010 aa; Sequence (Fasta)

Molecule Processing
Core protein p21
Core protein p19
Envelope glycoprotein E1
Envelope glycoprotein E2
p7
Protease NS2-3
Serine protease NS3
Non-structural protein 4A
Non-structural protein 4B
Non-structural protein 5A
RNA-directed RNA polymerase

Sequence Features

 952For protease NS2-3 activity; shared with dimeric partner
 972For protease NS2-3 activity; shared with dimeric partner
 993For protease NS2-3 activity; shared with dimeric partner
 1083Charge relay system; for serine protease NS3 activity
 1107Charge relay system; for serine protease NS3 activity
 1165Charge relay system; for serine protease NS3 activity
 1123Zinc
 1125Zinc
 1171Zinc
 1175Zinc
 2011Zinc
 2029Zinc
 2031Zinc
 2052Zinc
 169-189Helical
 359-379Helical
 726-746Helical
 758-778Helical
 783-803Helical
 814-834Helical
 882-902Helical
 929-949Helical
 1658-1678Helical
 1806-1826Helical
 1829-1849Helical
 1851-1871Helical
 1882-1902Helical
 1973-2002
 2990-3010Helical
 1230-1237ATP
 177-178Cleavage; by host signal peptidase
 191-192Cleavage; by host signal peptidase
 383-384Cleavage; by host signal peptidase
 746-747Cleavage; by host signal peptidase
 809-810Cleavage; by host signal peptidase
 1026-1027Cleavage; by protease NS2-3
 1657-1658Cleavage; by serine protease NS3
 1711-1712Cleavage; by serine protease NS3
 1972-1973Cleavage; by serine protease NS3
 2419-2420Cleavage; by serine protease NS3
 2-115Hepatitis C virus core protein, N-terminal
IPR002522PF01543
 116-190Hepatitis C virus core protein, C-terminal
IPR002521PF01542
 193-382Hepatitis C virus envelope glycoprotein E1
IPR002519PF01539
 387-729Hepatitis C virus non-structural protein E2/NS1
IPR002531PF01560
 812-1005Hepatitis C virus non-structural protein NS2
IPR002518PF01538
 1056-1203Peptidase S29, hepatitis C virus NS3 protease
IPR004109PF02907
 1294-1355DEAD box, Flavivirus
IPR011492PF07652
 1658-1711Hepatitis C virus non-structural protein NS4a
IPR000745PF01006
 1728-1921Hepatitis C virus non-structural protein NS4b
IPR001490PF01001
 1974-1996Hepatitis C virus non-structural 5a protein
IPR002868PF01506
 2006-2067NS5A domain 1a
IPR013192PF08300
 2068-2168Hepatitis C virus non-structural 5a, 1B domain
IPR013193PF08301
 2179-2419Hepatitus C virus, NS5a, C-terminal
IPR024350PF12941
 2422-2932RNA dependent RNA polymerase, hepatitis C virus
IPR002166PF00998

Sequence Alignments

Envelope glycoprotein E2 384-746; PRO_0000278758

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer BR;-0.696mei.1.A410-645
85.11

Serine protease NS3 1027-1657; PRO_0000278761

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer MG;-0.215wdx.1.A1027-1657
78.61

RNA-directed RNA polymerase 2420-3010; PRO_0000278765

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer 5X;-0.232ax0.1.A2420-2981
94.91