Q96EQ9 (PRDM9_MOUSE) Mus musculus (Mouse)

Histone-lysine N-methyltransferase PRDM9 UniProtKBInterProSTRINGInteractive Modelling

843 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3; Isoform 4; )

Sequence Features

 205Zinc 1
 208Zinc 1
 216Zinc 1
 219Zinc 1; via pros nitrogen
 390Zinc 2
 393Zinc 2
 406Zinc 2; via tele nitrogen
 411Zinc 2; via tele nitrogen
 707Zinc 3
 710Zinc 3
 723Zinc 3; via tele nitrogen
 727Zinc 3; via tele nitrogen
 735Zinc 4
 738Zinc 4
 751Zinc 4; via tele nitrogen
 755Zinc 4; via tele nitrogen
 763Zinc 5
 766Zinc 5
 779Zinc 5; via tele nitrogen
 783Zinc 5; via tele nitrogen
 791Zinc 6
 794Zinc 6
 807Zinc 6; via tele nitrogen
 811Zinc 6; via tele nitrogen
 388-411C2H2-type 1
 513-531C2H2-type 2; degenerate
 537-559C2H2-type 3
 565-587C2H2-type 4
 593-615C2H2-type 5
 621-643C2H2-type 6
 649-671C2H2-type 7
 677-699C2H2-type 8
 705-727C2H2-type 9
 733-755C2H2-type 10
 761-783C2H2-type 11
 789-811C2H2-type 12
 817-839C2H2-type 13
 28-65Krueppel-associated box
IPR001909PF01352
 171-201SSXRD motif
IPR019041PF09514
 293-358SET domain
IPR001214PF00856
 537-559Zinc finger C2H2-type
IPR013087PF00096
 565-587Zinc finger C2H2-type
IPR013087PF00096
 593-615Zinc finger C2H2-type
IPR013087PF00096
 621-643Zinc finger C2H2-type
IPR013087PF00096
 649-671Zinc finger C2H2-type
IPR013087PF00096
 677-699Zinc finger C2H2-type
IPR013087PF00096
 705-727Zinc finger C2H2-type
IPR013087PF00096
 733-755Zinc finger C2H2-type
IPR013087PF00096
 761-783Zinc finger C2H2-type
IPR013087PF00096
 789-811Zinc finger C2H2-type
IPR013087PF00096
 817-839Zinc finger C2H2-type
IPR013087PF00096

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Crystal structure of the PRDM9 SET domain in complex with H3K4me2 and AdoHcy. Heteromer
P68431;
SAH;ZN;4c1q198-367

Homology models

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer ZN;-0.284ijd.1.A195-413
85.00
monomer 10×ZN;-1.095wjq.1.C534-812
50.89
monomer ZN;1.205v3g.1.C534-700
82.35
monomer 10×ZN;-0.485v3m.1.C564-840
49.64
monomer ZN;-1.115wjq.1.C506-784
48.75

Homology models built on isoform sequence

Isoform #Oligo-stateLigandsQMEANTemplateRangeSeq id (%)ReportDownloadAssess
2monomerZN;SAM;KS7;0.716nm4.1.A195-379
88.77
4monomerZN;SAM;KS7;0.746nm4.1.A74-258
88.77
3monomerZN;-0.184ijd.1.A195-415
78.80
3monomer-2.973db5.2.A219-366
37.67
4monomer-2.993db5.2.A98-245
37.67
2monomer-3.223db5.2.A219-366
37.67