Q9Y2K7 (KDM2A_HUMAN) Homo sapiens (Human)

Lysine-specific demethylase 2A UniProtKBInterProSTRINGInteractive Modelling

1162 aa; Sequence (Fasta) ; (Isoform 2; Isoform 4; Isoform 5; Isoform 3; ) Identical sequences: Homo sapiens: I3VM53; Pan troglodytes: H2Q481; A0A6D2Y4R3; Pan paniscus: A0A2R9BKN1

Sequence Features

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 212Iron; catalytic
 214Iron; catalytic
 284Iron; catalytic
 571Zinc
 574Zinc
 577Zinc
 582Zinc
 585Zinc
 588Zinc
 604Zinc
 609Zinc
 620Zinc
 623Zinc
 642Zinc
 645Zinc
 650Zinc
 653Zinc
 672Zinc
 675Zinc
 564-610CXXC-type
 617-678PHD-type
 304-342Jumonji, helical domain
IPR041070PF17811
 565-609Zinc finger, CXXC-type
IPR002857PF02008
 614-676Zinc finger, PHD-finger
IPR019787PF16866
 896-934F-box domain
IPR001810PF00646

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRange
Ubiquitin Variant (UbV.Fl11.1) bound to a human Skp1-Fbl11 fragment complex. Heteromer
P0CG47; P63208;
6byh888-931
Assess
Ubiquitin variant (UbV.Fbl10.1) bound to a human Skp1-Fbl11 fragment complex. Heteromer
P0CG47; P63208;
6c16892-926
Assess
Crystal structure of hJHDM1A without a-ketoglutaratemonomer FE2;2yu234-517
Assess
Crystal structure of hJHDM1A complexed with a-ketoglutaratemonomer FE2;AKG;2yu136-517
Assess
Crystal structure of the CXXC and PHD domain of Human Lysine-specific Demethylase 2A (KDM2A)(FBXL11)monomer EDO;ZN;4bbq567-676
Assess

Homology models

Oligo-stateQMEANTemplateRangeSeq id (%)Ligands
monomer -0.88 5jh5.1.A893-1161
67.75
Assess

Homology models built on isoform sequence

IsoformOligo-stateLigandsQMEANTemplateRangeSeq id (%)
Isoform 2monomer-0.835jh5.1.A587-855
66.67
Assess
Isoform 2monomerZN;-0.734bbq.2.A261-370
100.00
Assess
Isoform 2monomer-3.982yu1.1.A1-211
93.79
Assess
Isoform 3monomerFE2;AKG;-2.252yu1.1.A36-517
97.78
Assess
Isoform 3monomerZN;-0.754bbq.2.A567-676
100.00
Assess
Isoform 4monomer-0.825jh5.1.A351-619
66.67
Assess
Isoform 4monomerZN;-0.704bbq.2.A25-134
100.00
Assess
Isoform 5monomer-0.905jh5.1.A454-722
66.67
Assess
Isoform 5monomerZN;-0.824bbq.2.A128-237
100.00
Assess