SMTL ID : 1azx.1 (1 other biounit)

ANTITHROMBIN/PENTASACCHARIDE COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x Z9L- Z9K- GU6- GU1- Z9H: 3,4-di-O-methyl-2,6-di-O-sulfo-alpha-D-glucopyranose-(1-4)-2,3-di-O-methyl-beta-D-glucopyranuronic acid-(1-4)-2,3,6-tri-O-sulfo-alpha-D-glucopyranose-(1-4)-3-O-methyl-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-methyl 2,3,6-tri-O-sulfo-alpha-D-glucopyranoside(Post Translational Modification)

Z9L-Z9K-GU6-GU1-Z9H.1: 14 residues within 4Å: Chain A: K.11, P.12, R.13, A.43, T.44, N.45, R.46, R.47, V.48, S.112, E.113, K.114, F.122, R.129 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.45, A:R.13, A:N.45, A:A.43, A:A.43, A:N.45, A:R.13, A:E.113, A:K.114 Salt bridges: A:K.11, A:K.125, A:K.11, A:K.11, A:R.13, A:K.114, A:K.114, A:R.129, A:R.13, A:R.46, A:R.47, A:K.114, A:R.13, A:R.46, A:R.47, A:R.47, A:K.114

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 7 residues within 4Å: Chain A: N.18, P.19, M.20, N.155, T.157, P.352, A.356 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.18, A:P.19 NAG.3: 1 residues within 4Å: Chain A: N.192 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jin, L. et al., The anticoagulant activation of antithrombin by heparin. Proc.Natl.Acad.Sci.USA (1997)

Release Date

1999-01-13

Peptides

ANTITHROMBIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

ANTITHROMBIN

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