SMTL ID : 1nq9.2 (1 other biounit)

Crystal Structure of Antithrombin in the Pentasaccharide-Bound Intermediate State

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: N.18, P.19, M.20, N.155, T.157, A.356 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.18, A:N.18 NAG-NAG.2: 1 residues within 4Å: Chain A: N.192 No protein-ligand interaction detected (PLIP)

1 x Z9L- Z9K- GU6- GU1- Z9H: 3,4-di-O-methyl-2,6-di-O-sulfo-alpha-D-glucopyranose-(1-4)-2,3-di-O-methyl-beta-D-glucopyranuronic acid-(1-4)-2,3,6-tri-O-sulfo-alpha-D-glucopyranose-(1-4)-3-O-methyl-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-methyl 2,3,6-tri-O-sulfo-alpha-D-glucopyranoside

Z9L-Z9K-GU6-GU1-Z9H.3: 14 residues within 4Å: Chain A: K.11, P.12, R.13, A.43, T.44, N.45, R.47, V.48, S.112, E.113, K.114, Q.118, F.122, R.129 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.11, A:N.45, A:K.11, A:R.13, A:N.45, A:A.43, A:A.43, A:T.44, A:N.45, A:S.112, A:E.113, A:K.114, A:Q.118 Salt bridges: A:K.11, A:K.11, A:K.114, A:K.114, A:R.129, A:R.47, A:K.114, A:R.47, A:R.47, A:K.114

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 4 residues within 4Å: Chain A: C.21, C.95, N.96, K.350 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Johnson, D.J.D. et al., Crystal Structure of Antithrombin in a Heparin-Bound Intermediate State. Biochemistry (2003)

Release Date

2003-09-30

Peptides

Antithrombin-III: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

Antithrombin-III

Related Entries With Identical Sequence