SMTL ID : 1b5h.1

OLIGO-PEPTIDE BINDING PROTEIN COMPLEXED WITH LYSYL-DIAMINOPROPANOIC ACID-LYSINE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x LYS- DPP- LYS: LYS-DPP-LYS PEPTIDE(Non-covalent)

LYS-DPP-LYS.1: 17 residues within 4Å: Chain A: E.32, G.33, V.34, S.37, Y.109, Y.245, N.246, N.247, Y.269, W.397, R.413, G.415, W.416, C.417, A.418, D.419, N.506 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:V.34, A:V.34 Hydrogen bonds: A:E.32, A:E.32, A:V.34, A:Y.109, A:Y.245, A:G.415, A:G.415, A:G.415, A:C.417, A:D.419, A:N.506 Water bridges: A:E.32, A:E.32, A:R.41, A:N.247, A:R.404, A:R.404, A:R.413, A:Y.485, A:N.506 Salt bridges: A:R.413

8 x U1: URANIUM ATOM(Non-covalent)(Non-functional Binders)

U1.2: 1 residues within 4Å: Chain A: D.323 No protein-ligand interaction detected (PLIP) U1.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) U1.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) U1.5: 3 residues within 4Å: Chain A: E.251, D.369, K.373 No protein-ligand interaction detected (PLIP) U1.6: 3 residues within 4Å: Chain A: K.281, D.362, D.410 No protein-ligand interaction detected (PLIP) U1.7: 1 residues within 4Å: Chain A: H.517 No protein-ligand interaction detected (PLIP) U1.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) U1.9: 1 residues within 4Å: Chain A: D.11 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davies, T.G. et al., Relating structure to thermodynamics: the crystal structures and binding affinity of eight OppA-peptide complexes. Protein Sci. (1999)

Release Date

1998-11-18

Peptides

OLIGO-PEPTIDE BINDING PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

OLIGO-PEPTIDE BINDING PROTEIN

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