SMTL ID : 1jev.1

OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KWK

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x LYS- TRP- LYS: PEPTIDE LYS TRP LYS(Non-covalent)

LYS-TRP-LYS.1: 23 residues within 4Å: Chain A: E.32, G.33, V.34, S.37, Y.109, Y.245, N.246, N.247, Y.269, Y.274, E.276, W.397, L.401, R.404, R.413, G.415, W.416, C.417, A.418, D.419, N.436, T.438, Y.485 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:V.34, A:V.34, A:W.397, A:L.401, A:W.416, A:Y.485 Hydrogen bonds: A:E.32, A:V.34, A:Y.109, A:Y.269, A:G.415, A:G.415, A:C.417, A:D.419 Water bridges: A:R.41, A:N.247, A:R.413, A:G.415, A:G.415, A:A.418, A:Y.485, A:L.504, A:N.506, A:N.506 Salt bridges: A:R.413 pi-Stacking: A:W.416, A:W.416 pi-Cation interactions: A:R.404

8 x IUM: URANYL (VI) ION(Non-covalent)(Non-functional Binders)

IUM.2: 1 residues within 4Å: Chain A: D.323 No protein-ligand interaction detected (PLIP) IUM.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) IUM.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) IUM.5: 2 residues within 4Å: Chain A: E.251, D.369 No protein-ligand interaction detected (PLIP) IUM.6: 2 residues within 4Å: Chain A: D.362, D.410 No protein-ligand interaction detected (PLIP) IUM.7: 2 residues within 4Å: Chain A: H.517 Ligands: IUM.8 No protein-ligand interaction detected (PLIP) IUM.8: 1 residues within 4Å: Ligands: IUM.7 No protein-ligand interaction detected (PLIP) IUM.9: 1 residues within 4Å: Chain A: D.11 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tame, J.R. et al., The role of water in sequence-independent ligand binding by an oligopeptide transporter protein. Nat.Struct.Biol. (1996)

Release Date

1997-05-15

Peptides

OLIGO-PEPTIDE BINDING PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

OLIGO-PEPTIDE BINDING PROTEIN

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