SMTL ID : 1bev.2 (3 other biounits)

BOVINE ENTEROVIRUS VG-5-27

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-5-5-5-5-mer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: S.128, T.129, G.130, H.230 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.130 Salt bridges: A:H.230 SO4.3: 3 residues within 4Å: Chain B: N.88, G.146, S.147 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.147, B:S.147 SO4.4: 4 residues within 4Å: Chain E: S.128, T.129, G.130, H.230 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:G.130 Salt bridges: E:H.230 SO4.6: 3 residues within 4Å: Chain F: N.88, G.146, S.147 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:S.147, F:S.147 SO4.7: 4 residues within 4Å: Chain I: S.128, T.129, G.130, H.230 2 PLIP interactions: 2 interactions with chain I Hydrogen bonds: I:G.130 Salt bridges: I:H.230 SO4.9: 3 residues within 4Å: Chain J: N.88, G.146, S.147 2 PLIP interactions: 2 interactions with chain J Hydrogen bonds: J:S.147, J:S.147 SO4.10: 4 residues within 4Å: Chain M: S.128, T.129, G.130, H.230 2 PLIP interactions: 2 interactions with chain M Hydrogen bonds: M:G.130 Salt bridges: M:H.230 SO4.12: 3 residues within 4Å: Chain N: N.88, G.146, S.147 2 PLIP interactions: 2 interactions with chain N Hydrogen bonds: N:S.147, N:S.147 SO4.13: 4 residues within 4Å: Chain Q: S.128, T.129, G.130, H.230 2 PLIP interactions: 2 interactions with chain Q Hydrogen bonds: Q:G.130 Salt bridges: Q:H.230 SO4.15: 3 residues within 4Å: Chain R: N.88, G.146, S.147 2 PLIP interactions: 2 interactions with chain R Hydrogen bonds: R:S.147, R:S.147

5 x MYR: MYRISTIC ACID(Non-covalent)

MYR.2: 10 residues within 4Å: Chain A: I.97, D.98, F.99, R.100, Y.145, F.180, V.182, M.185, Y.191, N.215 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.97, A:F.99, A:F.99, A:Y.145, A:Y.145, A:F.180, A:V.182, A:V.182, A:Y.191 Hydrogen bonds: A:F.99, A:N.215 Salt bridges: A:R.100 MYR.5: 10 residues within 4Å: Chain E: I.97, D.98, F.99, R.100, Y.145, F.180, V.182, M.185, Y.191, N.215 12 PLIP interactions: 12 interactions with chain E Hydrophobic interactions: E:I.97, E:F.99, E:F.99, E:Y.145, E:Y.145, E:F.180, E:V.182, E:V.182, E:Y.191 Hydrogen bonds: E:F.99, E:N.215 Salt bridges: E:R.100 MYR.8: 10 residues within 4Å: Chain I: I.97, D.98, F.99, R.100, Y.145, F.180, V.182, M.185, Y.191, N.215 12 PLIP interactions: 12 interactions with chain I Hydrophobic interactions: I:I.97, I:F.99, I:F.99, I:Y.145, I:Y.145, I:F.180, I:V.182, I:V.182, I:Y.191 Hydrogen bonds: I:F.99, I:N.215 Salt bridges: I:R.100 MYR.11: 10 residues within 4Å: Chain M: I.97, D.98, F.99, R.100, Y.145, F.180, V.182, M.185, Y.191, N.215 12 PLIP interactions: 12 interactions with chain M Hydrophobic interactions: M:I.97, M:F.99, M:F.99, M:Y.145, M:Y.145, M:F.180, M:V.182, M:V.182, M:Y.191 Hydrogen bonds: M:F.99, M:N.215 Salt bridges: M:R.100 MYR.14: 10 residues within 4Å: Chain Q: I.97, D.98, F.99, R.100, Y.145, F.180, V.182, M.185, Y.191, N.215 12 PLIP interactions: 12 interactions with chain Q Hydrophobic interactions: Q:I.97, Q:F.99, Q:F.99, Q:Y.145, Q:Y.145, Q:F.180, Q:V.182, Q:V.182, Q:Y.191 Hydrogen bonds: Q:F.99, Q:N.215 Salt bridges: Q:R.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smyth, M. et al., Implications for viral uncoating from the structure of bovine enterovirus. Nat.Struct.Biol. (1995)

Release Date

1998-09-16

Peptides

BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4: AEIMQ
BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4: BFJNR
BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4: CGKOS
BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4: DHLPT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

E
1

I
1

M
1

Q
1

B
2

F
2

J
2

N
2

R
2

C
3

G
3

K
3

O
3

S
3

D
4

H
4

L
4

P
4

T
4

BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4

BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4

BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4

BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4

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