SMTL ID : 1bs1.1 (1 other biounit)

DETHIOBIOTIN SYNTHETASE COMPLEXED WITH DETHIOBIOTIN, ADP , INORGANIC PHOSPHATE AND MAGNESIUM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 7 residues within 4Å: Chain A: T.16, K.37, D.54, E.115 Ligands: MG.2, ADP.3, DAA.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.16, A:D.54, A:E.115, H2O.4 MG.2: 4 residues within 4Å: Chain A: E.12 Ligands: MG.1, ADP.3, DAA.4 No protein-ligand interaction detected (PLIP)

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 19 residues within 4Å: Chain A: T.11, E.12, V.13, G.14, K.15, T.16, V.17, E.115, N.175, D.176, I.203, P.204, W.205, L.206, P.210, E.211 Ligands: MG.1, MG.2, DAA.4 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:E.12, A:E.12, A:V.13, A:G.14, A:K.15, A:T.16, A:V.17, A:N.175, A:P.204, A:L.206, A:E.211 Salt bridges: A:K.15

1 x DAA: 8-AMINO-7-CARBOXYAMINO-NONANOIC ACID WITH ALUMINUM FLUORIDE(Non-covalent)

DAA.4: 16 residues within 4Å: Chain A: T.11, K.15, K.37, A.40, S.41, D.54, P.79, T.80, S.81, E.115, A.117, G.118, T.122 Ligands: MG.1, MG.2, ADP.3 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.37, A:S.41, A:S.41 Water bridges: A:T.11, A:E.12, A:E.12, A:N.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kack, H. et al., Crystal structure of two quaternary complexes of dethiobiotin synthetase, enzyme-MgADP-AlF3-diaminopelargonic acid and enzyme-MgADP-dethiobiotin-phosphate; implications for catalysis. Protein Sci. (1998)

Release Date

1999-01-13

Peptides

PROTEIN (DETHIOBIOTIN SYNTHETASE): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTEIN (DETHIOBIOTIN SYNTHETASE)

Related Entries With Identical Sequence