SMTL ID : 1dbs.1

MECHANISTIC IMPLICATIONS AND FAMILY RELATIONSHIPS FROM THE STRUCTURE OF DETHIOBIOTIN SYNTHETASE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: E.12, V.13, G.14, K.15 Ligands: SO4.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.12, A:V.13, A:G.14, A:K.15 Water bridges: A:K.15, A:T.16 Salt bridges: A:K.15 SO4.2: 6 residues within 4Å: Chain A: K.15, K.37, D.54, A.117, G.118 Ligands: SO4.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.54, A:E.115, A:G.118 Water bridges: A:K.37, A:N.52, A:N.52 Salt bridges: A:K.15, A:K.37 SO4.3: 4 residues within 4Å: Chain A: R.51, Q.59, D.67, Y.68 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.59, A:Y.68 Water bridges: A:E.48, A:E.48, A:R.51, A:L.66, A:D.67, A:D.67 Salt bridges: A:R.51 SO4.4: 5 residues within 4Å: Chain B: E.12, V.13, G.14, K.15 Ligands: SO4.5 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:E.12, B:V.13, B:G.14, B:K.15 Water bridges: B:T.16, B:T.16 Salt bridges: B:K.15 SO4.5: 6 residues within 4Å: Chain B: K.15, K.37, D.54, A.117, G.118 Ligands: SO4.4 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.118 Water bridges: B:K.37, B:N.52, B:N.52 Salt bridges: B:K.15, B:K.37 SO4.6: 4 residues within 4Å: Chain B: R.51, Q.59, D.67, Y.68 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.59, B:Y.68 Water bridges: B:E.48, B:R.51, B:L.66 Salt bridges: B:R.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alexeev, D. et al., Mechanistic implications and family relationships from the structure of dethiobiotin synthetase. Structure (1994)

Release Date

1995-04-20

Peptides

DETHIOBIOTIN SYNTHETASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

DETHIOBIOTIN SYNTHETASE

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