SMTL ID : 1cvi.1 (2 other biounits)

CRYSTAL STRUCTURE OF HUMAN PROSTATIC ACID PHOSPHATASE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-tetramer

Ligands

1 x NAG- NAG- BMA- MAN- NAG- MAN- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.1: 4 residues within 4Å: Chain A: E.44, V.186, H.187, N.188 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.44 Hydrogen bonds: A:E.44, A:E.48

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.2: 5 residues within 4Å: Chain A: N.272, L.274, N.301, E.302, Y.308 No protein-ligand interaction detected (PLIP)

4 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.3: 6 residues within 4Å: Chain B: E.2, L.3, K.4, K.59, F.60, N.62 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:K.4 Hydrogen bonds: B:E.2, B:E.2 NAG-NAG-BMA.6: 2 residues within 4Å: Chain C: V.186, N.188 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.7: 5 residues within 4Å: Chain C: N.272, L.274, N.301, E.302, Y.308 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.9: 4 residues within 4Å: Chain D: N.272, N.301, E.302, Y.308 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.4: 3 residues within 4Å: Chain B: V.186, H.187, N.188 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.8: 5 residues within 4Å: Chain D: E.2, N.62, E.63, F.288, Y.293 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.2, D:Y.293, D:Y.293, D:E.2 Water bridges: D:Y.293

1 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN.5: 6 residues within 4Å: Chain B: N.272, L.274, P.277, N.301, E.302, Y.308 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.10: 3 residues within 4Å: Chain A: K.59, N.62, E.63 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.63 NAG.13: 1 residues within 4Å: Chain C: N.62 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.62 NAG.15: 3 residues within 4Å: Chain D: V.186, H.187, N.188 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.188

4 x GLY: GLYCINE(Non-covalent)

GLY.11: 6 residues within 4Å: Chain A: R.11, H.12, R.15, R.79, H.257, D.258 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.11, A:R.15 Water bridges: A:R.79 Salt bridges: A:H.12, A:R.15, A:R.79, A:H.257 GLY.12: 6 residues within 4Å: Chain B: R.11, H.12, R.15, R.79, H.257, D.258 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.11, B:R.15 Water bridges: B:W.174 Salt bridges: B:H.12, B:R.15, B:R.79, B:H.257 GLY.14: 6 residues within 4Å: Chain C: R.11, H.12, R.15, R.79, H.257, D.258 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:R.11, C:R.15 Water bridges: C:R.15, C:D.179 Salt bridges: C:H.12, C:R.15, C:R.79, C:H.257 GLY.16: 6 residues within 4Å: Chain D: R.11, H.12, R.15, R.79, H.257, D.258 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:R.11, D:R.15 Water bridges: D:R.79 Salt bridges: D:H.12, D:R.15, D:R.79, D:H.257

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jakob, C.G. et al., Crystal structure of human prostatic acid phosphatase . Prostate (2000)

Release Date

1999-08-31

Peptides

PROSTATIC ACID PHOSPHATASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

PROSTATIC ACID PHOSPHATASE

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