SMTL ID : 1cvi.3 (2 other biounits)

CRYSTAL STRUCTURE OF HUMAN PROSTATIC ACID PHOSPHATASE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 2 residues within 4Å: Chain A: V.186, N.188 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.2: 5 residues within 4Å: Chain A: N.272, L.274, N.301, E.302, Y.308 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.4: 4 residues within 4Å: Chain B: N.272, N.301, E.302, Y.308 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.3: 5 residues within 4Å: Chain B: E.2, N.62, E.63, F.288, Y.293 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.2, B:E.2, B:Y.293, B:Y.293 Water bridges: B:Y.293

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 1 residues within 4Å: Chain A: N.62 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.62 NAG.7: 3 residues within 4Å: Chain B: V.186, H.187, N.188 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.188

2 x GLY: GLYCINE(Non-covalent)

GLY.6: 6 residues within 4Å: Chain A: R.11, H.12, R.15, R.79, H.257, D.258 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.11, A:R.15 Water bridges: A:R.15, A:D.179 Salt bridges: A:H.12, A:R.15, A:R.79, A:H.257 GLY.8: 6 residues within 4Å: Chain B: R.11, H.12, R.15, R.79, H.257, D.258 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.11, B:R.15 Water bridges: B:R.79 Salt bridges: B:H.12, B:R.15, B:R.79, B:H.257

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jakob, C.G. et al., Crystal structure of human prostatic acid phosphatase . Prostate (2000)

Release Date

1999-08-31

Peptides

PROSTATIC ACID PHOSPHATASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

PROSTATIC ACID PHOSPHATASE

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