SMTL ID : 1ddo.2 (5 other biounits)

REDUCED D-AMINO ACID OXIDASE FROM PIG KIDNEY IN COMPLEX WITH IMINO-TRP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 37 residues within 4Å: Chain A: I.6, G.7, A.8, G.9, V.10, I.11, A.36, D.37, R.38, T.43, T.44, T.45, V.47, A.48, A.49, G.50, L.51, R.162, K.163, V.164, C.181, T.182, G.183, W.185, L.189, G.200, G.281, R.283, P.284, H.311, G.312, G.313, Y.314, G.315, L.316, T.317 Ligands: ITR.2 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:T.44, A:V.47, A:A.48, A:R.283 Hydrogen bonds: A:A.8, A:G.9, A:I.11, A:D.37, A:D.37, A:R.38, A:T.44, A:T.45, A:T.45, A:A.49, A:G.50, A:L.51, A:L.51, A:V.164, A:V.164, A:G.312, A:Y.314, A:G.315, A:L.316, A:T.317 FAD.3: 37 residues within 4Å: Chain B: I.6, G.7, A.8, G.9, V.10, I.11, A.36, D.37, R.38, T.43, T.44, T.45, V.47, A.48, A.49, G.50, L.51, R.162, K.163, V.164, C.181, T.182, G.183, W.185, L.189, G.200, G.281, R.283, P.284, H.311, G.312, G.313, Y.314, G.315, L.316, T.317 Ligands: ITR.4 25 PLIP interactions: 25 interactions with chain B Hydrophobic interactions: B:T.44, B:V.47, B:A.48, B:R.283 Hydrogen bonds: B:A.8, B:G.9, B:I.11, B:D.37, B:R.38, B:T.44, B:T.44, B:T.45, B:T.45, B:A.49, B:G.50, B:L.51, B:L.51, B:V.164, B:V.164, B:G.312, B:Y.314, B:G.315, B:L.316, B:T.317, B:T.317

2 x ITR: IMINO-TRYPTOPHAN(Non-covalent)

ITR.2: 9 residues within 4Å: Chain A: Q.53, P.54, I.215, I.223, Y.224, Y.228, R.283, G.313 Ligands: FAD.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Q.53, A:I.223 Salt bridges: A:R.283 pi-Stacking: A:Y.224, A:Y.228 ITR.4: 10 residues within 4Å: Chain B: Q.53, P.54, I.215, H.217, I.223, Y.224, Y.228, R.283, G.313 Ligands: FAD.3 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:Q.53, B:I.223 Hydrogen bonds: B:Y.224, B:Y.224 Salt bridges: B:R.283 pi-Stacking: B:Y.224, B:Y.224, B:Y.228

1 x DTR: D-TRYPTOPHAN(Non-covalent)

DTR.5: 8 residues within 4Å: Chain B: R.2, V.3, V.4, D.31, K.33, G.173, G.174, A.175 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:R.2, B:R.2, B:V.4, B:K.33 Hydrogen bonds: B:D.31, B:G.173 Salt bridges: B:K.33 pi-Cation interactions: B:K.33, B:K.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Todone, F. et al., Active site plasticity in D-amino acid oxidase: a crystallographic analysis. Biochemistry (1997)

Release Date

1997-07-23

Peptides

D-AMINO ACID OXIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
F

D-AMINO ACID OXIDASE

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