SMTL ID : 1ddo.5 (5 other biounits)

REDUCED D-AMINO ACID OXIDASE FROM PIG KIDNEY IN COMPLEX WITH IMINO-TRP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 37 residues within 4Å: Chain A: I.6, G.7, A.8, G.9, V.10, I.11, A.36, D.37, R.38, T.43, T.44, T.45, V.47, A.48, A.49, G.50, L.51, R.162, K.163, V.164, C.181, T.182, G.183, W.185, L.189, G.200, G.281, R.283, P.284, H.311, G.312, G.313, Y.314, G.315, L.316, T.317 Ligands: ITR.2 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:T.44, A:V.47, A:A.48, A:R.283 Hydrogen bonds: A:A.8, A:G.9, A:I.11, A:D.37, A:R.38, A:T.44, A:T.45, A:T.45, A:A.49, A:G.50, A:L.51, A:L.51, A:V.164, A:V.164, A:G.312, A:Y.314, A:G.315, A:L.316, A:T.317 FAD.3: 37 residues within 4Å: Chain B: I.6, G.7, A.8, G.9, V.10, I.11, A.36, D.37, R.38, T.43, T.44, T.45, V.47, A.48, A.49, G.50, L.51, R.162, K.163, V.164, C.181, T.182, G.183, W.185, L.189, G.200, G.281, R.283, P.284, H.311, G.312, G.313, Y.314, G.315, L.316, T.317 Ligands: ITR.4 25 PLIP interactions: 25 interactions with chain B Hydrophobic interactions: B:T.44, B:V.47, B:A.48, B:R.283 Hydrogen bonds: B:A.8, B:G.9, B:I.11, B:D.37, B:D.37, B:R.38, B:T.44, B:T.44, B:T.45, B:T.45, B:A.49, B:G.50, B:L.51, B:L.51, B:V.164, B:V.164, B:G.312, B:G.315, B:L.316, B:T.317, B:T.317 FAD.5: 37 residues within 4Å: Chain C: I.6, G.7, A.8, G.9, V.10, I.11, A.36, D.37, R.38, T.43, T.44, T.45, V.47, A.48, A.49, G.50, L.51, R.162, K.163, V.164, C.181, T.182, G.183, W.185, L.189, G.200, G.281, R.283, P.284, H.311, G.312, G.313, Y.314, G.315, L.316, T.317 Ligands: ITR.6 22 PLIP interactions: 22 interactions with chain C Hydrophobic interactions: C:T.44, C:V.47, C:A.48, C:R.283 Hydrogen bonds: C:A.8, C:G.9, C:I.11, C:D.37, C:R.38, C:T.44, C:T.45, C:T.45, C:A.49, C:G.50, C:L.51, C:L.51, C:V.164, C:V.164, C:G.312, C:G.315, C:L.316, C:T.317 FAD.7: 37 residues within 4Å: Chain D: I.6, G.7, A.8, G.9, V.10, I.11, A.36, D.37, R.38, T.43, T.44, T.45, V.47, A.48, A.49, G.50, L.51, R.162, K.163, V.164, C.181, T.182, G.183, W.185, L.189, G.200, G.281, R.283, P.284, H.311, G.312, G.313, Y.314, G.315, L.316, T.317 Ligands: ITR.8 26 PLIP interactions: 26 interactions with chain D Hydrophobic interactions: D:T.44, D:V.47, D:A.48, D:R.283 Hydrogen bonds: D:A.8, D:G.9, D:I.11, D:D.37, D:D.37, D:R.38, D:T.44, D:T.44, D:T.45, D:T.45, D:A.49, D:G.50, D:L.51, D:L.51, D:V.164, D:V.164, D:G.312, D:Y.314, D:G.315, D:L.316, D:T.317, D:T.317

4 x ITR: IMINO-TRYPTOPHAN(Non-covalent)

ITR.2: 10 residues within 4Å: Chain A: Q.53, P.54, I.215, H.217, I.223, Y.224, Y.228, R.283, G.313 Ligands: FAD.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Q.53, A:I.223 Salt bridges: A:R.283 pi-Stacking: A:Y.224, A:Y.224, A:Y.228 ITR.4: 10 residues within 4Å: Chain B: Q.53, P.54, I.215, H.217, I.223, Y.224, Y.228, R.283, G.313 Ligands: FAD.3 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:Q.53, B:I.223, B:Y.224 Hydrogen bonds: B:Y.224 Salt bridges: B:R.283 pi-Stacking: B:Y.224, B:Y.224, B:Y.228 ITR.6: 9 residues within 4Å: Chain C: Q.53, P.54, I.215, H.217, Y.224, Y.228, R.283, G.313 Ligands: FAD.5 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:Q.53, C:Y.224 Salt bridges: C:R.283 pi-Stacking: C:Y.224, C:Y.228 ITR.8: 9 residues within 4Å: Chain D: Q.53, P.54, I.215, H.217, Y.224, Y.228, R.283, G.313 Ligands: FAD.7 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:Q.53 Hydrogen bonds: D:Y.224 Salt bridges: D:R.283 pi-Stacking: D:Y.224, D:Y.224, D:Y.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Todone, F. et al., Active site plasticity in D-amino acid oxidase: a crystallographic analysis. Biochemistry (1997)

Release Date

1997-07-23

Peptides

D-AMINO ACID OXIDASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
G

D
H

D-AMINO ACID OXIDASE

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