SMTL ID : 1dlf.1

HIGH RESOLUTION CRYSTAL STRUCTURE OF THE FV FRAGMENT FROM AN ANTI-DANSYL SWITCH VARIANT ANTIBODY IGG2A(S) CRYSTALLIZED AT PH 5.25

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

hetero-1-1-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain B: F.27, T.28, Y.102, Y.103 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.28, B:T.28, B:Y.103, B:Y.103 SO4.2: 3 residues within 4Å: Chain B: K.78, R.80, Y.82 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.82 Water bridges: B:S.21, B:Y.82 Salt bridges: B:K.78, B:R.80 SO4.3: 0 residues within 4Å: (No contacts) 2 PLIP interactions: 2 interactions with chain B Water bridges: B:G.8, B:G.9 SO4.4: 5 residues within 4Å: Chain B: F.27, T.28, F.29, S.30, R.79 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:F.29, B:S.30 Water bridges: B:S.30, B:D.76, B:D.76, B:R.79, B:R.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakasako, M. et al., The pH-dependent structural variation of complementarity-determining region H3 in the crystal structures of the Fv fragment from an anti-dansyl monoclonal antibody. J.Mol.Biol. (1999)

Release Date

1999-07-26

Peptides

ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S): A
ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S)

ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S)

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