- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x NAG- NAG- BMA- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x SCN: THIOCYANATE ION(Non-functional Binders)
SCN.3: 9 residues within 4Å:- Chain A: V.30, R.31, W.32, L.33
- Chain B: N.214, V.215, L.318, P.319, W.324
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:N.214, B:V.215, A:W.32
SCN.10: 6 residues within 4Å:- Chain A: Q.91, H.95
- Chain B: R.127, E.130
- Ligands: CYN.5, HEM.12
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:Q.91
- Water bridges: B:R.127
SCN.16: 9 residues within 4Å:- Chain C: V.30, R.31, W.32, L.33
- Chain D: N.214, V.215, L.318, P.319, W.324
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:N.214, D:V.215, C:W.32
SCN.18: 6 residues within 4Å:- Chain C: Q.91, H.95
- Chain D: R.127, E.130
- Ligands: CYN.19, HEM.20
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain C- Water bridges: D:R.127
- Hydrogen bonds: C:Q.91
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 3 residues within 4Å:- Chain A: T.73
- Chain B: D.288, R.293
9 PLIP interactions:3 interactions with chain A, 6 interactions with chain B- Hydrogen bonds: A:T.73
- Water bridges: A:T.73, A:T.73, B:D.288, B:R.293, B:R.293, B:R.293, B:R.293
- Salt bridges: B:R.293
SO4.9: 1 residues within 4Å:- Chain B: R.117
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.117
SO4.17: 3 residues within 4Å:- Chain C: T.73
- Chain D: D.288, R.293
9 PLIP interactions:4 interactions with chain C, 5 interactions with chain D- Hydrogen bonds: C:T.73, C:T.73
- Water bridges: C:T.73, C:D.74, D:D.288, D:R.293, D:R.293, D:R.293
- Salt bridges: D:R.293
- 4 x CYN: CYANIDE ION(Non-covalent)
CYN.5: 5 residues within 4Å:- Chain A: Q.91, D.94, H.95
- Ligands: SCN.10, HEM.12
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:Q.91
- Water bridges: B:R.127
CYN.11: 4 residues within 4Å:- Chain B: N.88, Q.89, P.100, F.101
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.89, B:F.101
CYN.19: 4 residues within 4Å:- Chain C: Q.91, H.95
- Ligands: SCN.18, HEM.20
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:Q.91, C:H.95
- Water bridges: D:R.127
CYN.24: 4 residues within 4Å:- Chain D: N.88, Q.89, P.100, F.101
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Q.89, D:R.90
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.6: 6 residues within 4Å:- Chain B: N.77, N.80, L.84, A.86, V.87, Q.89
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:A.86
- Hydrogen bonds: B:N.80, B:V.87, B:Q.89, B:Q.89
- Water bridges: B:N.77, B:N.77, B:N.77
NAG.7: 5 residues within 4Å:- Chain B: N.113, S.115, A.116, W.257, L.261
No protein-ligand interaction detected (PLIP)NAG.21: 6 residues within 4Å:- Chain D: N.77, N.80, L.84, A.86, V.87, Q.89
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:N.80, D:V.87, D:Q.89, D:Q.89
- Water bridges: D:N.77, D:N.77, D:N.77
NAG.22: 4 residues within 4Å:- Chain D: N.113, S.115, A.116, W.257
1 PLIP interactions:1 interactions with chain D- Water bridges: D:R.258
- 2 x CA: CALCIUM ION(Non-covalent)
CA.8: 5 residues within 4Å:- Chain A: D.96
- Chain B: T.56, F.58, D.60, S.62
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Metal complexes: B:T.56, B:F.58, B:D.60, B:S.62, A:D.96
CA.23: 5 residues within 4Å:- Chain C: D.96
- Chain D: T.56, F.58, D.60, S.62
5 PLIP interactions:4 interactions with chain D, 1 interactions with chain C- Metal complexes: D:T.56, D:F.58, D:D.60, D:S.62, C:D.96
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
HEM.12: 24 residues within 4Å:- Chain A: M.87, G.90, Q.91, D.94, D.98, F.99, T.100
- Chain B: R.127, E.130, M.131, Y.184, T.217, F.220, R.221, G.223, H.224, I.227, F.253, F.295, L.305, L.308, R.312
- Ligands: CYN.5, SCN.10
24 PLIP interactions:7 interactions with chain A, 17 interactions with chain B,- Hydrophobic interactions: A:Q.91, A:Q.91, A:D.94, B:E.130, B:M.131, B:F.220, B:R.221, B:I.227, B:F.253, B:F.295, B:F.295, B:L.305, B:L.305
- Hydrogen bonds: A:D.98, A:D.98, A:T.100, A:T.100
- Water bridges: B:R.221, B:R.221, B:R.221
- Salt bridges: B:R.127, B:R.221, B:R.312
- Metal complexes: B:H.224
HEM.20: 26 residues within 4Å:- Chain C: M.87, G.90, Q.91, D.94, D.98, F.99, T.100
- Chain D: R.127, E.130, M.131, Y.184, T.217, F.220, R.221, Y.222, G.223, H.224, I.227, F.253, L.294, F.295, L.305, L.308, R.312
- Ligands: SCN.18, CYN.19
23 PLIP interactions:18 interactions with chain D, 5 interactions with chain C,- Hydrophobic interactions: D:E.130, D:M.131, D:F.220, D:R.221, D:Y.222, D:I.227, D:F.253, D:L.294, D:F.295, D:L.305, D:L.305, C:Q.91, C:Q.91
- Water bridges: D:R.221, D:R.221, D:R.221
- Salt bridges: D:R.127, D:R.221, D:R.312
- Metal complexes: D:H.224
- Hydrogen bonds: C:D.98, C:D.98, C:T.100
- 6 x ACY: ACETIC ACID(Non-functional Binders)
ACY.13: 4 residues within 4Å:- Chain B: P.11, P.12, R.36, R.49
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:P.11
- Salt bridges: B:R.49
ACY.14: 2 residues within 4Å:- Chain B: M.410, R.413
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:M.410
- Salt bridges: B:R.413
ACY.15: 3 residues within 4Å:- Chain B: P.191, R.195, R.375
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:P.191
- Salt bridges: B:R.195, B:R.375
ACY.25: 3 residues within 4Å:- Chain D: P.12, R.36, R.49
4 PLIP interactions:4 interactions with chain D- Water bridges: D:S.37, D:R.49
- Salt bridges: D:R.36, D:R.49
ACY.26: 2 residues within 4Å:- Chain D: M.410, R.413
1 PLIP interactions:1 interactions with chain D- Salt bridges: D:R.413
ACY.27: 4 residues within 4Å:- Chain D: P.191, R.195, R.375, K.376
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:P.191
- Salt bridges: D:R.195, D:R.375, D:K.376
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Blair-Johnson, M. et al., Human myeloperoxidase: structure of a cyanide complex and its interaction with bromide and thiocyanate substrates at 1.9 A resolution. Biochemistry (2001)
- Release Date
- 2001-12-21
- Peptides
- MYELOPEROXIDASE: AC
MYELOPEROXIDASE: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BB
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x NAG- NAG- BMA- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x SCN: THIOCYANATE ION(Non-functional Binders)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- 4 x CYN: CYANIDE ION(Non-covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x CA: CALCIUM ION(Non-covalent)
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 6 x ACY: ACETIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Blair-Johnson, M. et al., Human myeloperoxidase: structure of a cyanide complex and its interaction with bromide and thiocyanate substrates at 1.9 A resolution. Biochemistry (2001)
- Release Date
- 2001-12-21
- Peptides
- MYELOPEROXIDASE: AC
MYELOPEROXIDASE: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BB
CD
D