SMTL ID : 1drt.1

CRYSTAL STRUCTURE OF CLAVAMINATE SYNTHASE IN COMPLEX WITH FE(II), 2-OXOGLUTARATE AND PROCLAVAMINIC ACID

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x PCV: 5-AMINO-3-HYDROXY-2-(2-OXO-AZETIDIN-1-YL)-PENTANOIC ACID(Non-covalent)

PCV.1: 13 residues within 4Å: Chain A: L.114, R.115, L.132, S.133, S.134, H.144, E.146, M.147, Y.149, D.202, F.205, R.297, Y.299 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.114 Hydrogen bonds: A:S.134, A:S.134, A:H.144, A:Y.149, A:R.297 Salt bridges: A:R.115, A:R.297

1 x FE2: FE (II) ION(Non-covalent)

FE2.2: 4 residues within 4Å: Chain A: H.144, E.146, H.279 Ligands: AKG.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.144, A:E.146, A:H.279

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.3: 13 residues within 4Å: Chain A: V.123, S.134, L.141, H.144, E.146, L.159, T.172, H.279, R.281, R.293, L.295, R.297 Ligands: FE2.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.141, A:L.159, A:R.281 Hydrogen bonds: A:S.134, A:T.172 Water bridges: A:R.281 Salt bridges: A:H.279, A:R.293, A:R.297

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., Structural origins of the selectivity of the trifunctional oxygenase clavaminic acid synthase. Nat.Struct.Biol. (2000)

Release Date

2000-07-06

Peptides

CLAVAMINATE SYNTHASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CLAVAMINATE SYNTHASE 1

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