SMTL ID : 1e3u.2 (1 other biounit)

MAD structure of OXA10 class D beta-lactamase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

hetero-1-1-mer

Ligands

4 x AUC: GOLD (I) CYANIDE ION(Non-covalent)

AUC.1: 9 residues within 4Å: Chain A: A.46, S.47, F.49, K.50, N.53, V.97, F.100, W.134, L.135 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.49 Water bridges: A:S.47 AUC.12: 9 residues within 4Å: Chain B: A.46, S.47, F.49, K.50, N.53, F.100, W.134, L.135 Ligands: AUC.13 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:F.49, B:N.53 AUC.13: 7 residues within 4Å: Chain B: K.50, A.96, V.97, F.100, Q.101, W.134 Ligands: AUC.12 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.96, B:A.96 AUC.14: 4 residues within 4Å: Chain B: E.109, V.110, Q.113, I.126 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.109 Water bridges: B:E.109, B:S.127

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: S.47, S.95, K.185, T.186, G.187, F.188, R.230 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.47, A:S.95, A:T.186, A:T.186 Water bridges: A:K.185, A:F.188 Salt bridges: A:K.185, A:R.230 SO4.3: 3 residues within 4Å: Chain A: M.79, K.80, Q.81 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.80, A:Q.81, A:Q.81 SO4.4: 4 residues within 4Å: Chain A: E.15, S.225, K.226, L.229 3 PLIP interactions: 3 interactions with chain A Water bridges: A:E.15, A:S.225 Salt bridges: A:K.226 SO4.5: 8 residues within 4Å: Chain A: P.178, E.179, Y.180, L.181, E.207, E.209 Chain B: T.87, R.89 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:T.87, A:E.179, A:L.181 Water bridges: B:R.89, B:G.90, A:E.207, A:E.207 SO4.15: 5 residues within 4Å: Chain B: S.47, T.186, G.187, F.188, R.230 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.47, B:S.47, B:T.186 Water bridges: B:K.185, B:R.230 Salt bridges: B:K.185, B:R.230 SO4.16: 3 residues within 4Å: Chain A: E.163 Chain B: S.161, K.162 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.162 Water bridges: B:E.163, A:E.163 SO4.17: 3 residues within 4Å: Chain B: T.193, S.195, N.196 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.195, B:N.196, B:N.196

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 6 residues within 4Å: Chain A: N.9, F.12, V.17, N.18, G.19, N.34 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.19, A:G.19 EDO.7: 3 residues within 4Å: Chain A: W.8, K.25, E.241 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.241 EDO.8: 4 residues within 4Å: Chain A: T.60, R.111, K.114, Y.115 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.60, A:R.111, A:K.114, A:Y.115, A:Y.115 EDO.9: 7 residues within 4Å: Chain A: E.175, Y.180, V.182, T.235, M.238, E.239, I.243 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.175, A:Y.180, A:I.243 EDO.10: 5 residues within 4Å: Chain A: N.18, P.197, D.220, I.221, D.222 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.16, A:N.18, A:D.220, A:D.220 Water bridges: A:N.18 EDO.11: 2 residues within 4Å: Chain A: N.123, N.125 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.123, A:N.125 Water bridges: A:E.42 EDO.18: 8 residues within 4Å: Chain A: T.87, R.89 Chain B: P.178, E.179, Y.180, L.181, E.207, E.209 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.89, B:E.209 Water bridges: A:G.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maveyraud, L. et al., Insights Into Class D Beta-Lactamases are Revealed by the Crystal Structure of the Oxa10 Enzyme from Pseudomonas Aeruginosa. Structure (2000)

Release Date

2001-01-12

Peptides

BETA-LACTAMASE OXA-10: A
BETA-LACTAMASE OXA-10: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

BETA-LACTAMASE OXA-10

BETA-LACTAMASE OXA-10

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