SMTL ID : 1k54.2 (1 other biounit)

OXA-10 class D beta-lactamase partially acylated with reacted 6beta-(1-hydroxy-1-methylethyl) penicillanic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: S.47, S.95, K.185, T.186, G.187, F.188, R.230 Ligands: SO4.2, HOQ.10 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.95, A:T.186, A:T.186 Water bridges: A:K.185 Salt bridges: A:K.185, A:R.230 SO4.2: 4 residues within 4Å: Chain A: T.186, R.230, K.231 Ligands: SO4.1 7 PLIP interactions: 7 interactions with chain A Water bridges: A:T.186, A:T.186, A:K.231, A:K.231, A:K.231 Salt bridges: A:R.230, A:K.231 SO4.3: 2 residues within 4Å: Chain B: R.230, K.231 4 PLIP interactions: 4 interactions with chain B Water bridges: B:R.230, B:R.230 Salt bridges: B:R.230, B:K.231 SO4.4: 6 residues within 4Å: Chain B: S.47, K.50, V.94, S.95, A.96, V.97 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.47, B:S.47, B:S.95, B:A.96 Water bridges: B:T.186 Salt bridges: B:K.50 SO4.5: 3 residues within 4Å: Chain A: M.79, K.80, Q.81 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.80, A:Q.81 Salt bridges: A:K.80 SO4.6: 4 residues within 4Å: Chain A: T.60, R.111, K.114, Y.115 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.115, A:Y.115 Water bridges: A:R.111, A:R.111 Salt bridges: A:R.111, A:K.114 SO4.7: 1 residues within 4Å: Chain A: R.140 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.140 SO4.8: 2 residues within 4Å: Chain B: S.161, K.162 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:E.163, B:K.162 Water bridges: A:E.163, B:E.163, B:Q.165 SO4.9: 4 residues within 4Å: Chain B: T.186, G.187, F.188, R.230 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.186 Water bridges: B:K.185, B:F.188 Salt bridges: B:R.230

1 x HOQ: (1R)-2-(1-CARBOXY-2-HYDROXY-2-METHYL-PROPYL)-5,5-DIMETHYL-THIAZOLIDINE-4-CARBOXYLIC ACID(Covalent)

HOQ.10: 10 residues within 4Å: Chain A: A.46, S.47, K.50, W.82, V.97, L.135, G.187, F.188, S.189 Ligands: SO4.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.46, A:W.82 Hydrogen bonds: A:S.47, A:W.134, A:F.188, A:F.188

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.11: 5 residues within 4Å: Chain A: E.179, E.207, E.209 Chain B: T.87, R.89 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:E.207, A:E.207, B:T.87 Water bridges: B:L.88 EDO.12: 4 residues within 4Å: Chain A: N.18, P.197, D.220, D.222 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.16 Water bridges: A:N.18 EDO.13: 6 residues within 4Å: Chain A: T.87, R.89, G.90 Chain B: E.179, E.207, E.209 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Water bridges: B:E.207, B:E.207 Hydrogen bonds: A:T.87, A:G.90 EDO.14: 2 residues within 4Å: Chain B: V.110, R.111 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Golemi, D. et al., Critical involvement of a carbamylated lysine in catalytic function of class D beta-lactamases. Proc.Natl.Acad.Sci.USA (2001)

Release Date

2001-11-07

Peptides

Beta lactamase OXA-10: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Beta lactamase OXA-10

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