SMTL ID : 1e4d.1 (1 other biounit)

Structure of OXA10 beta-lactamase at pH 8.3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: S.47, S.95, K.185, T.186, G.187, F.188, R.230 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.47, A:S.95, A:T.186, A:G.187 Water bridges: A:V.94, A:V.94, A:T.186, A:F.188, A:F.188 Salt bridges: A:K.185, A:R.230 SO4.2: 4 residues within 4Å: Chain A: T.60, R.111, K.114, Y.115 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.115 Salt bridges: A:R.111, A:K.114 SO4.3: 4 residues within 4Å: Chain A: A.78, M.79, K.80, Q.81 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.80, A:Q.81 SO4.4: 3 residues within 4Å: Chain A: G.108, E.109, V.110 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.109, A:V.110 Water bridges: A:R.111 SO4.6: 7 residues within 4Å: Chain B: E.175, Y.180, V.182, W.202, V.206, T.235, M.238 No protein-ligand interaction detected (PLIP) SO4.7: 5 residues within 4Å: Chain B: T.186, L.227, P.228, R.230, K.231 3 PLIP interactions: 3 interactions with chain B Water bridges: B:P.228 Salt bridges: B:R.230, B:K.231 SO4.8: 3 residues within 4Å: Chain B: M.79, K.80, Q.81 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.80, B:Q.81, B:Q.81 SO4.9: 7 residues within 4Å: Chain B: S.47, S.95, K.185, T.186, G.187, F.188, R.230 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:S.47, B:S.47, B:S.95, B:T.186 Water bridges: B:K.185, B:F.188 Salt bridges: B:K.185, B:R.230

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 6 residues within 4Å: Chain A: E.175, Y.180, V.182, M.238, E.239, I.243 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.175, A:Y.180, A:I.243 EDO.10: 10 residues within 4Å: Chain A: T.87, R.89, G.90 Chain B: A.177, P.178, E.179, Y.180, L.181, E.207, E.209 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.89, B:E.209 Water bridges: A:G.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maveyraud, L. et al., Insights Into Class D Beta-Lactamases are Revealed by the Crystal Structure of the Oxa10 Enzyme from Pseudomonas Aeruginosa. Structure (2000)

Release Date

2001-01-12

Peptides

BETA-LACTAMASE OXA-10: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

BETA-LACTAMASE OXA-10

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