SMTL ID : 1ef2.1

CRYSTAL STRUCTURE OF MANGANESE-SUBSTITUTED KLEBSIELLA AEROGENES UREASE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-oligomer

Ligands

6 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: K.216, H.218, H.245, H.271, G.276 Ligands: MN.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.245, A:H.271, H2O.149, H2O.150 MN.2: 5 residues within 4Å: Chain A: H.133, H.135, K.216, D.359 Ligands: MN.1 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.133, A:H.135, A:D.359, H2O.149, H2O.151 MN.3: 6 residues within 4Å: Chain D: K.216, H.218, H.245, H.271, G.276 Ligands: MN.4 4 PLIP interactions: 2 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:H.245, D:H.271, H2O.325, H2O.326 MN.4: 5 residues within 4Å: Chain D: H.133, H.135, K.216, D.359 Ligands: MN.3 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:H.133, D:H.135, D:D.359, H2O.325, H2O.327 MN.5: 6 residues within 4Å: Chain G: K.216, H.218, H.245, H.271, G.276 Ligands: MN.6 4 PLIP interactions: 2 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:H.245, G:H.271, H2O.501, H2O.502 MN.6: 5 residues within 4Å: Chain G: H.133, H.135, K.216, D.359 Ligands: MN.5 5 PLIP interactions: 3 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:H.133, G:H.135, G:D.359, H2O.501, H2O.503

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamaguchi, K. et al., Characterization of metal-substituted Klebsiella aerogenes urease. J.Biol.Inorg.Chem. (1999)

Release Date

2000-03-09

Peptides

UREASE ALPHA SUBUNIT: ADG
UREASE BETA SUBUNIT: BEH
UREASE GAMMA SUBUNIT: CFI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

G
A

B
B

E
B

H
B

C
C

F
C

I
C

UREASE ALPHA SUBUNIT

UREASE BETA SUBUNIT

UREASE GAMMA SUBUNIT

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