SMTL ID : 4epd.1

Initial Urease Structure for Radiation Damage Experiment at 300 K

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-oligomer

Ligands

6 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 6 residues within 4Å: Chain A: K.216, H.218, H.245, H.271, G.276 Ligands: NI.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.245, A:H.271, H2O.2, H2O.3 NI.2: 5 residues within 4Å: Chain A: H.133, H.135, K.216, D.359 Ligands: NI.1 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.133, A:H.135, A:D.359, H2O.2, H2O.4 NI.3: 6 residues within 4Å: Chain D: K.216, H.218, H.245, H.271, G.276 Ligands: NI.4 4 PLIP interactions: 2 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:H.245, D:H.271, H2O.535, H2O.536 NI.4: 5 residues within 4Å: Chain D: H.133, H.135, K.216, D.359 Ligands: NI.3 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:H.133, D:H.135, D:D.359, H2O.535, H2O.537 NI.5: 6 residues within 4Å: Chain G: K.216, H.218, H.245, H.271, G.276 Ligands: NI.6 4 PLIP interactions: 2 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:H.245, G:H.271, H2O.1068, H2O.1069 NI.6: 5 residues within 4Å: Chain G: H.133, H.135, K.216, D.359 Ligands: NI.5 5 PLIP interactions: 3 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:H.133, G:H.135, G:D.359, H2O.1068, H2O.1070

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Warkentin, M. et al., Spatial distribution of radiation damage to crystalline proteins at 25-300 K. Acta Crystallogr.,Sect.D (2012)

Release Date

2012-08-29

Peptides

Urease subunit alpha: ADG
Urease subunit beta: BEH
Urease subunit gamma: CFI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

D
C

G
C

B
B

E
B

H
B

C
A

F
A

I
A

Urease subunit alpha

Urease subunit beta

Urease subunit gamma

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