SMTL ID : 1euw.1

ATOMIC RESOLUTION STRUCTURE OF E. COLI DUTPASE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

homo-trimer

Ligands

3 x EMC: ETHYL MERCURY ION(Non-covalent)

EMC.1: 6 residues within 4Å: Chain A: D.11, R.13, C.36, L.37, N.38, P.52 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.52 Metal complexes: A:C.36, A:C.36 EMC.4: 6 residues within 4Å: Chain B: D.11, R.13, C.36, L.37, N.38, P.52 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:P.52 Metal complexes: B:C.36, B:C.36 EMC.7: 6 residues within 4Å: Chain C: D.11, R.13, C.36, L.37, N.38, P.52 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:P.52 Metal complexes: C:C.36, C:C.36

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: L.50, N.84, M.98, I.99, S.100 Chain B: S.72, G.73, H.76 Ligands: GOL.3 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:M.98, B:S.72 Water bridges: A:N.84, A:N.84, A:N.84, A:S.100, B:S.72, B:S.72 GOL.3: 7 residues within 4Å: Chain A: L.88, I.89, Y.93, Q.96, L.97, M.98 Ligands: GOL.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Y.93, A:M.98, A:M.98 Water bridges: A:N.84, A:L.88, A:L.88, A:D.90, A:D.90, A:D.90, A:Y.93 GOL.5: 9 residues within 4Å: Chain B: L.50, N.84, M.98, I.99, S.100 Chain C: S.72, G.73, H.76 Ligands: GOL.6 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain C Hydrogen bonds: B:M.98, C:S.72 Water bridges: B:N.84, B:N.84, B:N.84, B:S.100, C:S.72, C:S.72 GOL.6: 7 residues within 4Å: Chain B: L.88, I.89, Y.93, Q.96, L.97, M.98 Ligands: GOL.5 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:Y.93, B:M.98, B:M.98 Water bridges: B:N.84, B:L.88, B:L.88, B:D.90, B:D.90, B:D.90, B:Y.93 GOL.8: 9 residues within 4Å: Chain A: S.72, G.73, H.76 Chain C: L.50, N.84, M.98, I.99, S.100 Ligands: GOL.9 8 PLIP interactions: 5 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:M.98, A:S.72 Water bridges: C:N.84, C:N.84, C:N.84, C:S.100, A:S.72, A:S.72 GOL.9: 7 residues within 4Å: Chain C: L.88, I.89, Y.93, Q.96, L.97, M.98 Ligands: GOL.8 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:Y.93, C:M.98, C:M.98 Water bridges: C:N.84, C:L.88, C:L.88, C:D.90, C:D.90, C:D.90, C:Y.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gonzalez, A. et al., Atomic resolution structure of Escherichia coli dUTPase determined ab initio. Acta Crystallogr.,Sect.D (2001)

Release Date

2000-05-03

Peptides

DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE

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