SMTL ID : 1f7q.1

CRYSTAL STRUCTURES OF FELINE IMMUNODEFICIENCY VIRUS DUTP PYROPHOSPHATASE AND ITS NUCLEOTIDE COMPLEXES IN THREE CRYSTAL FORMS.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

homo-trimer

Ligands

2 x DUT: DEOXYURIDINE-5'-TRIPHOSPHATE(Non-covalent)

DUT.1: 11 residues within 4Å: Chain A: G.67, G.68, V.69, I.70, D.71, Y.74, G.79 Chain C: K.55, S.56, S.57, K.97 19 PLIP interactions: 8 interactions with chain A, 11 interactions with chain C Hydrophobic interactions: A:Y.74 Hydrogen bonds: A:V.69, A:D.71, A:D.71, A:G.79, A:G.79, C:S.56, C:S.56, C:S.56, C:S.57 Water bridges: A:V.69, A:I.81, C:G.54, C:Q.100, C:Q.100 Salt bridges: C:K.55, C:K.55, C:K.55, C:K.97 DUT.2: 13 residues within 4Å: Chain B: K.55, S.56, S.57, K.97, Q.100 Chain C: I.52, G.68, V.69, I.70, D.71, Y.74, I.78, G.79 17 PLIP interactions: 7 interactions with chain C, 10 interactions with chain B Hydrophobic interactions: C:I.70, C:Y.74 Hydrogen bonds: C:V.69, C:D.71, C:G.79, C:G.79, B:S.56, B:S.56, B:S.56, B:S.57 Water bridges: C:I.81, B:K.55, B:K.55 Salt bridges: B:K.55, B:K.55, B:K.55, B:K.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prasad, G.S. et al., Structures of feline immunodeficiency virus dUTP pyrophosphatase and its nucleotide complexes in three crystal forms. Acta Crystallogr.,Sect.D (2000)

Release Date

2000-09-06

Peptides

POL POLYPROTEIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

POL POLYPROTEIN

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