SMTL ID : 1fsi.4 (5 other biounits)

CRYSTAL STRUCTURE OF CYCLIC NUCLEOTIDE PHOSPHODIESTERASE OF APPR>P FROM ARABIDOPSIS THALIANA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-hexamer

Ligands

18 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: H.42, T.44, H.119, S.121, Y.124 Ligand excluded by PLIP SO4.2: 4 residues within 4Å: Chain A: R.76, S.78, T.79, Q.136 Ligand excluded by PLIP SO4.3: 6 residues within 4Å: Chain A: R.31, R.38 Chain B: R.31, R.38 Chain C: R.31, R.38 Ligand excluded by PLIP SO4.4: 6 residues within 4Å: Chain B: W.12, H.42, T.44, H.119, S.121, Y.124 Ligand excluded by PLIP SO4.5: 6 residues within 4Å: Chain B: R.76, V.77, S.78, T.79, K.133, Q.136 Ligand excluded by PLIP SO4.6: 6 residues within 4Å: Chain B: K.5, K.160, E.172 Chain D: K.5, K.160, E.172 Ligand excluded by PLIP SO4.7: 5 residues within 4Å: Chain C: H.42, T.44, H.119, S.121, Y.124 Ligand excluded by PLIP SO4.8: 5 residues within 4Å: Chain C: R.76, V.77, S.78, T.79, Q.136 Ligand excluded by PLIP SO4.9: 7 residues within 4Å: Chain C: K.5, D.7, K.160, E.172 Chain F: K.160, E.172 Ligands: SO4.18 Ligand excluded by PLIP SO4.10: 5 residues within 4Å: Chain D: H.42, T.44, H.119, S.121, Y.124 Ligand excluded by PLIP SO4.11: 4 residues within 4Å: Chain D: R.76, S.78, T.79, Q.136 Ligand excluded by PLIP SO4.12: 6 residues within 4Å: Chain D: R.31, R.38 Chain E: R.31, R.38 Chain F: R.31, R.38 Ligand excluded by PLIP SO4.13: 6 residues within 4Å: Chain E: W.12, H.42, T.44, H.119, S.121, Y.124 Ligand excluded by PLIP SO4.14: 6 residues within 4Å: Chain E: R.76, V.77, S.78, T.79, K.133, Q.136 Ligand excluded by PLIP SO4.15: 6 residues within 4Å: Chain A: K.5, K.160, E.172 Chain E: K.5, K.160, E.172 Ligand excluded by PLIP SO4.16: 5 residues within 4Å: Chain F: H.42, T.44, H.119, S.121, Y.124 Ligand excluded by PLIP SO4.17: 5 residues within 4Å: Chain F: R.76, V.77, S.78, T.79, Q.136 Ligand excluded by PLIP SO4.18: 7 residues within 4Å: Chain C: K.160, E.172 Chain F: K.5, D.7, K.160, E.172 Ligands: SO4.9 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hofmann, A. et al., Structure and mechanism of activity of the cyclic phosphodiesterase of Appr>p, a product of the tRNA splicing reaction. EMBO J. (2000)

Release Date

2000-11-22

Peptides

CYCLIC PHOSPHODIESTERASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

CYCLIC PHOSPHODIESTERASE

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