SMTL ID : 1jh7.3 (2 other biounits)

Semi-reduced Inhibitor-bound Cyclic Nucleotide Phosphodiesterase from Arabidopsis thaliana

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: S.78 4 PLIP interactions: 4 interactions with chain A Water bridges: A:T.79, A:T.79, A:T.79, A:Q.136 SO4.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.3: 1 residues within 4Å: Ligands: SO4.4 No protein-ligand interaction detected (PLIP) SO4.4: 2 residues within 4Å: Chain A: E.28 Ligands: SO4.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.28 SO4.7: 1 residues within 4Å: Chain B: S.78 4 PLIP interactions: 4 interactions with chain B Water bridges: B:T.79, B:T.79, B:T.79, B:Q.136 SO4.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.9: 1 residues within 4Å: Ligands: SO4.10 No protein-ligand interaction detected (PLIP) SO4.10: 2 residues within 4Å: Chain B: E.28 Ligands: SO4.9 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.28

4 x UVC: URIDINE-2',3'-VANADATE(Non-covalent)

UVC.5: 12 residues within 4Å: Chain A: S.10, W.12, H.42, T.44, F.84, H.119, S.121, Y.124, T.161, T.163, W.171 Chain B: Y.50 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.10, A:T.44, A:T.44, A:S.121, A:Y.124, A:T.161, A:T.161, A:T.163, B:Y.50 UVC.6: 6 residues within 4Å: Chain A: R.31, G.36, P.37, R.38, F.39, L.168 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.37 Hydrogen bonds: A:G.36, A:P.37, A:R.38 UVC.11: 12 residues within 4Å: Chain A: Y.50 Chain B: S.10, W.12, H.42, T.44, F.84, H.119, S.121, Y.124, T.161, T.163, W.171 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.10, B:T.44, B:T.44, B:S.121, B:T.161, B:T.163 UVC.12: 6 residues within 4Å: Chain B: R.31, G.36, P.37, R.38, F.39, L.168 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:P.37 Hydrogen bonds: B:G.36, B:P.37, B:R.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hofmann, A. et al., Crystal structures of the semireduced and inhibitor-bound forms of cyclic nucleotide phosphodiesterase from Arabidopsis thaliana. J.Biol.Chem. (2002)

Release Date

2002-02-06

Peptides

cyclic phosphodiesterase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

cyclic phosphodiesterase

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