- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- hetero-8-8-mer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x CAP: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE(Non-covalent)
CAP.2: 21 residues within 4Å:- Chain A: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404
- Chain I: E.60, T.65, W.66, N.123
- Ligands: MG.1
34 PLIP interactions:31 interactions with chain A, 3 interactions with chain I- Hydrogen bonds: A:T.173, A:T.173, A:K.175, A:S.379, A:S.379, A:G.381, A:G.403, A:G.404, I:T.65, I:N.123
- Water bridges: A:T.173, A:T.173, A:K.177, A:K.177, A:K.177, A:R.295, A:R.295, A:R.295, A:R.295, A:H.298, A:G.329, A:S.379, A:G.380, A:I.382, A:I.382, A:G.405, I:T.65
- Salt bridges: A:K.175, A:K.175, A:K.177, A:R.295, A:H.327, A:K.334, A:K.334
CAP.11: 21 residues within 4Å:- Chain B: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404
- Chain L: E.60, T.65, W.66, N.123
- Ligands: MG.10
34 PLIP interactions:31 interactions with chain B, 3 interactions with chain L- Hydrogen bonds: B:T.173, B:T.173, B:K.175, B:S.379, B:S.379, B:G.381, B:G.403, B:G.404, L:T.65, L:N.123
- Water bridges: B:T.173, B:T.173, B:K.177, B:K.177, B:K.177, B:R.295, B:R.295, B:R.295, B:R.295, B:H.298, B:G.329, B:G.329, B:G.380, B:I.382, B:I.382, B:G.405, L:T.65
- Salt bridges: B:K.175, B:K.175, B:K.177, B:R.295, B:H.327, B:K.334, B:K.334
CAP.18: 21 residues within 4Å:- Chain C: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404
- Chain K: E.60, T.65, W.66, N.123
- Ligands: MG.17
33 PLIP interactions:30 interactions with chain C, 3 interactions with chain K- Hydrogen bonds: C:T.173, C:T.173, C:K.175, C:H.298, C:S.379, C:S.379, C:G.381, C:G.403, C:G.404, K:T.65, K:N.123
- Water bridges: C:T.173, C:T.173, C:K.177, C:K.177, C:K.177, C:R.295, C:R.295, C:R.295, C:G.329, C:S.379, C:G.380, C:I.382, C:I.382, C:G.405, K:T.65
- Salt bridges: C:K.175, C:K.175, C:K.177, C:R.295, C:H.327, C:K.334, C:K.334
CAP.27: 21 residues within 4Å:- Chain D: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404
- Chain J: E.60, T.65, W.66, N.123
- Ligands: MG.26
32 PLIP interactions:29 interactions with chain D, 3 interactions with chain J- Hydrogen bonds: D:T.173, D:T.173, D:K.175, D:H.298, D:S.379, D:S.379, D:G.381, D:G.403, D:G.404, J:T.65, J:N.123
- Water bridges: D:K.177, D:K.177, D:K.177, D:R.295, D:R.295, D:R.295, D:G.329, D:G.329, D:G.380, D:I.382, D:I.382, D:Q.401, D:G.405, J:T.65
- Salt bridges: D:K.175, D:K.175, D:K.177, D:R.295, D:H.327, D:K.334, D:K.334
CAP.43: 21 residues within 4Å:- Chain A: E.60, T.65, W.66, N.123
- Chain I: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404
- Ligands: MG.42
34 PLIP interactions:31 interactions with chain I, 3 interactions with chain A- Hydrogen bonds: I:T.173, I:K.175, I:S.379, I:S.379, I:G.381, I:G.403, I:G.404, A:T.65, A:T.65, A:N.123
- Water bridges: I:T.173, I:T.173, I:K.177, I:K.177, I:K.177, I:K.177, I:R.295, I:R.295, I:R.295, I:R.295, I:H.298, I:G.329, I:S.379, I:G.380, I:I.382, I:I.382, I:G.405
- Salt bridges: I:K.175, I:K.175, I:K.177, I:R.295, I:H.327, I:K.334, I:K.334
CAP.52: 21 residues within 4Å:- Chain D: E.60, T.65, W.66, N.123
- Chain J: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404
- Ligands: MG.51
34 PLIP interactions:31 interactions with chain J, 3 interactions with chain D- Hydrogen bonds: J:T.173, J:K.175, J:S.379, J:S.379, J:G.381, J:G.403, J:G.404, D:T.65, D:T.65, D:N.123
- Water bridges: J:T.173, J:T.173, J:K.177, J:K.177, J:K.177, J:K.177, J:R.295, J:R.295, J:R.295, J:R.295, J:H.298, J:G.329, J:G.329, J:G.380, J:I.382, J:I.382, J:G.405
- Salt bridges: J:K.175, J:K.175, J:K.177, J:R.295, J:H.327, J:K.334, J:K.334
CAP.59: 21 residues within 4Å:- Chain C: E.60, T.65, W.66, N.123
- Chain K: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404
- Ligands: MG.58
33 PLIP interactions:30 interactions with chain K, 3 interactions with chain C- Hydrogen bonds: K:T.173, K:K.175, K:H.298, K:S.379, K:S.379, K:G.381, K:G.403, K:G.404, C:T.65, C:T.65, C:N.123
- Water bridges: K:T.173, K:T.173, K:K.177, K:K.177, K:K.177, K:K.177, K:R.295, K:R.295, K:R.295, K:G.329, K:S.379, K:G.380, K:I.382, K:I.382, K:G.405
- Salt bridges: K:K.175, K:K.175, K:K.177, K:R.295, K:H.327, K:K.334, K:K.334
CAP.68: 21 residues within 4Å:- Chain B: E.60, T.65, W.66, N.123
- Chain L: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404
- Ligands: MG.67
33 PLIP interactions:30 interactions with chain L, 3 interactions with chain B- Hydrogen bonds: L:T.173, L:K.175, L:H.298, L:S.379, L:S.379, L:G.381, L:G.403, L:G.404, B:T.65, B:T.65, B:N.123
- Water bridges: L:T.173, L:K.177, L:K.177, L:K.177, L:K.177, L:R.295, L:R.295, L:R.295, L:G.329, L:G.329, L:G.380, L:I.382, L:I.382, L:Q.401, L:G.405
- Salt bridges: L:K.175, L:K.175, L:K.177, L:R.295, L:H.327, L:K.334, L:K.334
- 66 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 7 residues within 4Å:- Chain A: Y.24, G.64, T.68, V.69, D.72, L.77
- Ligands: EDO.4
Ligand excluded by PLIPEDO.4: 9 residues within 4Å:- Chain A: G.16, V.17, K.18, Y.20, T.65, W.66, T.67, T.68
- Ligands: EDO.3
Ligand excluded by PLIPEDO.5: 4 residues within 4Å:- Chain A: Y.20, E.52
- Chain I: F.469
- Ligands: EDO.6
Ligand excluded by PLIPEDO.6: 5 residues within 4Å:- Chain A: G.47, V.48, P.49, E.52
- Ligands: EDO.5
Ligand excluded by PLIPEDO.7: 4 residues within 4Å:- Chain A: K.466, F.467, E.468, F.469
Ligand excluded by PLIPEDO.8: 6 residues within 4Å:- Chain A: R.295, H.298, F.311, E.336, F.345, D.473
Ligand excluded by PLIPEDO.9: 3 residues within 4Å:- Chain A: L.270
- Chain I: L.270
- Ligands: EDO.50
Ligand excluded by PLIPEDO.12: 7 residues within 4Å:- Chain B: Y.24, G.64, T.68, V.69, D.72, L.77
- Ligands: EDO.13
Ligand excluded by PLIPEDO.13: 9 residues within 4Å:- Chain B: G.16, V.17, K.18, Y.20, T.65, W.66, T.67, T.68
- Ligands: EDO.12
Ligand excluded by PLIPEDO.14: 3 residues within 4Å:- Chain B: Y.20, E.52, A.129
Ligand excluded by PLIPEDO.15: 4 residues within 4Å:- Chain B: K.466, F.467, E.468, F.469
Ligand excluded by PLIPEDO.16: 6 residues within 4Å:- Chain B: R.295, H.298, F.311, E.336, F.345, D.473
Ligand excluded by PLIPEDO.19: 7 residues within 4Å:- Chain C: Y.24, G.64, T.68, V.69, D.72, L.77
- Ligands: EDO.20
Ligand excluded by PLIPEDO.20: 9 residues within 4Å:- Chain C: G.16, V.17, K.18, Y.20, T.65, W.66, T.67, T.68
- Ligands: EDO.19
Ligand excluded by PLIPEDO.21: 4 residues within 4Å:- Chain C: Y.20, E.52
- Chain K: F.469
- Ligands: EDO.22
Ligand excluded by PLIPEDO.22: 5 residues within 4Å:- Chain C: G.47, V.48, P.49, E.52
- Ligands: EDO.21
Ligand excluded by PLIPEDO.23: 4 residues within 4Å:- Chain C: K.466, F.467, E.468, F.469
Ligand excluded by PLIPEDO.24: 7 residues within 4Å:- Chain C: R.295, H.298, D.302, F.311, E.336, F.345, D.473
Ligand excluded by PLIPEDO.25: 3 residues within 4Å:- Chain C: L.270
- Chain K: L.270
- Ligands: EDO.66
Ligand excluded by PLIPEDO.28: 7 residues within 4Å:- Chain D: Y.24, G.64, T.68, V.69, D.72, L.77
- Ligands: EDO.29
Ligand excluded by PLIPEDO.29: 9 residues within 4Å:- Chain D: G.16, V.17, K.18, Y.20, T.65, W.66, T.67, T.68
- Ligands: EDO.28
Ligand excluded by PLIPEDO.30: 3 residues within 4Å:- Chain D: Y.20, E.52
- Chain J: F.469
Ligand excluded by PLIPEDO.31: 4 residues within 4Å:- Chain D: K.466, F.467, E.468, F.469
Ligand excluded by PLIPEDO.32: 7 residues within 4Å:- Chain D: R.295, H.298, D.302, F.311, E.336, F.345, D.473
Ligand excluded by PLIPEDO.33: 2 residues within 4Å:- Chain D: L.270
- Chain J: L.270
Ligand excluded by PLIPEDO.34: 6 residues within 4Å:- Chain B: Y.226, K.227, A.230
- Chain E: K.49, E.55, D.69
Ligand excluded by PLIPEDO.35: 6 residues within 4Å:- Chain E: G.37, W.38, I.39, F.81, G.82, C.83
Ligand excluded by PLIPEDO.36: 7 residues within 4Å:- Chain C: Y.226, K.227, A.230
- Chain F: K.49, E.55, S.56, D.69
Ligand excluded by PLIPEDO.37: 6 residues within 4Å:- Chain F: G.37, W.38, I.39, F.81, G.82, C.83
Ligand excluded by PLIPEDO.38: 7 residues within 4Å:- Chain D: Y.226, K.227, A.230
- Chain G: K.49, E.55, S.56, D.69
Ligand excluded by PLIPEDO.39: 7 residues within 4Å:- Chain G: G.37, W.38, I.39, F.81, G.82, C.83, R.84
Ligand excluded by PLIPEDO.40: 6 residues within 4Å:- Chain A: Y.226, K.227, A.230
- Chain H: K.49, E.55, D.69
Ligand excluded by PLIPEDO.41: 7 residues within 4Å:- Chain H: G.37, W.38, I.39, F.81, G.82, C.83, R.84
Ligand excluded by PLIPEDO.44: 7 residues within 4Å:- Chain I: Y.24, G.64, T.68, V.69, D.72, L.77
- Ligands: EDO.45
Ligand excluded by PLIPEDO.45: 9 residues within 4Å:- Chain I: G.16, V.17, K.18, Y.20, T.65, W.66, T.67, T.68
- Ligands: EDO.44
Ligand excluded by PLIPEDO.46: 4 residues within 4Å:- Chain A: F.469
- Chain I: Y.20, E.52
- Ligands: EDO.47
Ligand excluded by PLIPEDO.47: 5 residues within 4Å:- Chain I: G.47, V.48, P.49, E.52
- Ligands: EDO.46
Ligand excluded by PLIPEDO.48: 4 residues within 4Å:- Chain I: K.466, F.467, E.468, F.469
Ligand excluded by PLIPEDO.49: 6 residues within 4Å:- Chain I: R.295, H.298, F.311, E.336, F.345, D.473
Ligand excluded by PLIPEDO.50: 3 residues within 4Å:- Chain A: L.270
- Chain I: L.270
- Ligands: EDO.9
Ligand excluded by PLIPEDO.53: 7 residues within 4Å:- Chain J: Y.24, G.64, T.68, V.69, D.72, L.77
- Ligands: EDO.54
Ligand excluded by PLIPEDO.54: 9 residues within 4Å:- Chain J: G.16, V.17, K.18, Y.20, T.65, W.66, T.67, T.68
- Ligands: EDO.53
Ligand excluded by PLIPEDO.55: 3 residues within 4Å:- Chain J: Y.20, E.52, A.129
Ligand excluded by PLIPEDO.56: 4 residues within 4Å:- Chain J: K.466, F.467, E.468, F.469
Ligand excluded by PLIPEDO.57: 6 residues within 4Å:- Chain J: R.295, H.298, F.311, E.336, F.345, D.473
Ligand excluded by PLIPEDO.60: 7 residues within 4Å:- Chain K: Y.24, G.64, T.68, V.69, D.72, L.77
- Ligands: EDO.61
Ligand excluded by PLIPEDO.61: 9 residues within 4Å:- Chain K: G.16, V.17, K.18, Y.20, T.65, W.66, T.67, T.68
- Ligands: EDO.60
Ligand excluded by PLIPEDO.62: 4 residues within 4Å:- Chain C: F.469
- Chain K: Y.20, E.52
- Ligands: EDO.63
Ligand excluded by PLIPEDO.63: 5 residues within 4Å:- Chain K: G.47, V.48, P.49, E.52
- Ligands: EDO.62
Ligand excluded by PLIPEDO.64: 4 residues within 4Å:- Chain K: K.466, F.467, E.468, F.469
Ligand excluded by PLIPEDO.65: 7 residues within 4Å:- Chain K: R.295, H.298, D.302, F.311, E.336, F.345, D.473
Ligand excluded by PLIPEDO.66: 3 residues within 4Å:- Chain C: L.270
- Chain K: L.270
- Ligands: EDO.25
Ligand excluded by PLIPEDO.69: 7 residues within 4Å:- Chain L: Y.24, G.64, T.68, V.69, D.72, L.77
- Ligands: EDO.70
Ligand excluded by PLIPEDO.70: 9 residues within 4Å:- Chain L: G.16, V.17, K.18, Y.20, T.65, W.66, T.67, T.68
- Ligands: EDO.69
Ligand excluded by PLIPEDO.71: 3 residues within 4Å:- Chain B: F.469
- Chain L: Y.20, E.52
Ligand excluded by PLIPEDO.72: 4 residues within 4Å:- Chain L: K.466, F.467, E.468, F.469
Ligand excluded by PLIPEDO.73: 7 residues within 4Å:- Chain L: R.295, H.298, D.302, F.311, E.336, F.345, D.473
Ligand excluded by PLIPEDO.74: 2 residues within 4Å:- Chain B: L.270
- Chain L: L.270
Ligand excluded by PLIPEDO.75: 6 residues within 4Å:- Chain J: Y.226, K.227, A.230
- Chain M: K.49, E.55, D.69
Ligand excluded by PLIPEDO.76: 6 residues within 4Å:- Chain M: G.37, W.38, I.39, F.81, G.82, C.83
Ligand excluded by PLIPEDO.77: 7 residues within 4Å:- Chain K: Y.226, K.227, A.230
- Chain N: K.49, E.55, S.56, D.69
Ligand excluded by PLIPEDO.78: 6 residues within 4Å:- Chain N: G.37, W.38, I.39, F.81, G.82, C.83
Ligand excluded by PLIPEDO.79: 7 residues within 4Å:- Chain L: Y.226, K.227, A.230
- Chain O: K.49, E.55, S.56, D.69
Ligand excluded by PLIPEDO.80: 7 residues within 4Å:- Chain O: G.37, W.38, I.39, F.81, G.82, C.83, R.84
Ligand excluded by PLIPEDO.81: 6 residues within 4Å:- Chain I: Y.226, K.227, A.230
- Chain P: K.49, E.55, D.69
Ligand excluded by PLIPEDO.82: 7 residues within 4Å:- Chain P: G.37, W.38, I.39, F.81, G.82, C.83, R.84
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Taylor, T.C. et al., First Crystal Structure of Rubisco from a Green Alga, Chlamydomonas Reinhardtii. J.Biol.Chem. (2001)
- Release Date
- 2001-10-24
- Peptides
- RIBULOSE-1,5 BISPHOSPHATE CARBOXYLASE LARGE CHAIN: ABCDIJKL
RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1: EFGHMNOP - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
ED
GI
AJ
CK
EL
GE
IF
KG
MH
OM
IN
KO
MP
O
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- hetero-8-8-mer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x CAP: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE(Non-covalent)
- 66 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Taylor, T.C. et al., First Crystal Structure of Rubisco from a Green Alga, Chlamydomonas Reinhardtii. J.Biol.Chem. (2001)
- Release Date
- 2001-10-24
- Peptides
- RIBULOSE-1,5 BISPHOSPHATE CARBOXYLASE LARGE CHAIN: ABCDIJKL
RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1: EFGHMNOP - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
ED
GI
AJ
CK
EL
GE
IF
KG
MH
OM
IN
KO
MP
O