SMTL ID : 1gvw.1

Endothiapepsin complex with PD-130,328

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.00 Å

Oligo State

monomer

Ligands

1 x 0EM: N-(tert-butoxycarbonyl)-L-phenylalanyl-N-{(1S)-1-[(R)-hydroxy(2-{[(2S)-2-methylbutyl]amino}-2-oxoethyl)phosphoryl]-3-methylbutyl}-3-(1H-imidazol-3-ium-4-yl)-L-alaninamide(Non-covalent)

0EM.1: 25 residues within 4Å: Chain A: I.10, D.15, D.33, D.35, G.37, S.38, S.77, Y.78, G.79, D.80, S.82, D.118, I.121, L.124, L.132, F.193, D.218, G.220, T.221, T.222, L.223, Y.225, F.279, I.299, I.303 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:I.10, A:D.15, A:Y.78, A:Y.78, A:D.80, A:I.121, A:L.124, A:F.193, A:L.223, A:F.279 Hydrogen bonds: A:D.35, A:G.79, A:D.80, A:D.80, A:G.220, A:G.220, A:T.222, A:T.222, A:T.222 Water bridges: A:L.223

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: K.242, S.244, S.245, S.246 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.245, A:S.246 Salt bridges: A:K.242 SO4.3: 2 residues within 4Å: Chain A: S.112, S.113 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.113 Water bridges: A:S.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coates, L. et al., Five Atomic Resolution Structures of Endothiapepsin Inhibitor Complexes: Implications for the Aspartic Proteinase Mechanism. J.Mol.Biol. (2002)

Release Date

2002-07-04

Peptides

ENDOTHIAPEPSIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ENDOTHIAPEPSIN

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