SMTL ID : 2vs2.1

Neutron diffraction structure of endothiapepsin in complex with a gem- diol inhibitor.

Coordinates

PDB Format

Method

NEUTRON DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x 0QS: N~2~-[(2R)-2-benzyl-3-(tert-butylsulfonyl)propanoyl]-N-{(1R)-1-(cyclohexylmethyl)-3,3-difluoro-2,2-dihydroxy-4-[(2-morpholin-4-ylethyl)amino]-4-oxobutyl}-3-(1H-imidazol-3-ium-4-yl)-L-alaninamide(Covalent)

0QS.1: 32 residues within 4Å: Chain A: I.10, D.15, A.16, D.33, D.35, G.37, S.38, S.39, I.76, S.77, Y.78, G.79, D.80, S.82, F.115, D.118, I.121, L.124, L.132, T.134, F.193, I.216, D.218, G.220, T.221, T.222, L.223, Y.225, F.279, F.290, I.299, I.303 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:I.10, A:D.15, A:A.16, A:Y.78, A:F.115, A:I.121, A:L.124, A:L.223 Hydrogen bonds: A:D.35, A:D.35, A:G.37, A:S.38, A:S.38, A:G.79, A:G.79, A:D.80, A:D.80, A:D.218, A:G.220, A:T.221, A:T.222, A:Y.225

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coates, L. et al., The Catalytic Mechanism of an Aspartic Proteinase Explored with Neutron and X-Ray Diffraction. J.Am.Chem.Soc. (2008)

Release Date

2008-05-27

Peptides

ENDOTHIAPEPSIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ENDOTHIAPEPSIN

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