SMTL ID : 1gx5.1

Hepatitis C Virus RNA Polymerase in Complex with GTP and Manganese

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

4 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 9 residues within 4Å: Chain A: R.48, D.220, T.221, R.222, C.223, F.224, D.318 Ligands: MN.3, MN.4 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.48, A:D.220, A:C.223, A:F.224 Water bridges: A:D.220, A:D.220, A:D.225 GTP.2: 9 residues within 4Å: Chain A: R.32, R.490, G.493, V.494, P.495, P.496, V.499, R.503 Ligands: MN.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.32, A:R.503 Water bridges: A:R.32, A:H.33 GTP.6: 9 residues within 4Å: Chain B: R.48, D.220, T.221, R.222, C.223, F.224, D.318 Ligands: MN.8, MN.9 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.48, B:D.220, B:C.223, B:F.224 Water bridges: B:D.220, B:D.220, B:D.225 GTP.7: 9 residues within 4Å: Chain B: R.32, R.490, G.493, V.494, P.495, P.496, V.499, R.503 Ligands: MN.10 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.32, B:R.503 Water bridges: B:R.32, B:H.33

6 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)

MN.3: 5 residues within 4Å: Chain A: D.220, T.221, D.318 Ligands: GTP.1, MN.4 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.220, A:T.221, H2O.15, H2O.25 MN.4: 4 residues within 4Å: Chain A: D.318, D.319 Ligands: GTP.1, MN.3 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.318, A:D.319, H2O.25, H2O.26, H2O.26 MN.5: 1 residues within 4Å: Ligands: GTP.2 No protein-ligand interaction detected (PLIP) MN.8: 5 residues within 4Å: Chain B: D.220, T.221, D.318 Ligands: GTP.6, MN.9 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.220, B:T.221, H2O.40, H2O.51 MN.9: 4 residues within 4Å: Chain B: D.318, D.319 Ligands: GTP.6, MN.8 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.318, B:D.319, H2O.51, H2O.51, H2O.51 MN.10: 1 residues within 4Å: Ligands: GTP.7 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bressanelli, S. et al., A Structural Analysis of the Hepatitis C Virus RNA Polymerase in Complex with Ribonucleotides. J.Virol. (2002)

Release Date

2002-04-09

Peptides

RNA-DIRECTED RNA POLYMERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

RNA-DIRECTED RNA POLYMERASE

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