- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x BGC- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose(Post Translational Modification)
BGC-GAL-SIA.2: 19 residues within 4Å:- Chain A: Y.98, G.134, G.135, S.136, N.137, A.138, S.145, W.153, T.155, H.183, T.187, E.190, L.194, W.222, G.225, L.226, S.228
- Ligands: NAG-NAG-BMA.4, NAG-NAG-BMA.4
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:E.190, A:G.225, A:Y.98, A:G.135, A:S.136, A:N.137, A:H.183, A:S.228
- Hydrophobic interactions: A:W.153, A:T.155
BGC-GAL-SIA.3: 17 residues within 4Å:- Chain A: T.65, D.68, E.89, S.95, Y.100, D.101, V.102, P.103, Y.105, A.106, R.109, R.269
- Chain B: E.69, F.70, S.71, E.72
- Chain C: R.208
12 PLIP interactions:6 interactions with chain A, 1 interactions with chain C, 5 interactions with chain B- Hydrogen bonds: A:T.65, A:S.95, A:Y.100, A:Y.100, C:R.208, A:V.102, B:E.69, B:S.71, B:S.71, B:E.72, A:Y.105, A:Y.105, A:R.109, A:R.269, A:R.269
- Hydrophobic interactions: B:E.72
- Water bridges: A:R.269
BGC-GAL-SIA.5: 17 residues within 4Å:- Chain C: Y.98, G.134, G.135, S.136, N.137, A.138, W.153, T.155, H.183, T.187, E.190, L.194, W.222, G.225, L.226, S.228
- Ligands: NAG-NAG-BMA.7
9 PLIP interactions:9 interactions with chain C- Hydrogen bonds: C:E.190, C:Y.98, C:Y.98, C:G.135, C:S.136, C:N.137, C:H.183, C:S.228
- Hydrophobic interactions: C:W.153, C:T.155
BGC-GAL-SIA.6: 17 residues within 4Å:- Chain C: T.65, D.68, E.89, S.95, Y.100, D.101, V.102, P.103, Y.105, A.106, R.109, R.269
- Chain D: E.69, F.70, S.71, E.72
- Chain E: R.208
12 PLIP interactions:6 interactions with chain C, 1 interactions with chain E, 5 interactions with chain D- Hydrogen bonds: C:T.65, C:S.95, C:Y.100, C:Y.100, E:R.208, C:V.102, C:Y.105, C:Y.105, C:R.109, C:R.269, C:R.269, D:E.69, D:S.71, D:S.71, D:E.72
- Water bridges: C:R.269
- Hydrophobic interactions: D:E.72
BGC-GAL-SIA.8: 18 residues within 4Å:- Chain E: Y.98, G.134, G.135, S.136, N.137, A.138, W.153, T.155, H.183, T.187, E.190, L.194, W.222, G.225, L.226, S.228
- Ligands: NAG-NAG-BMA.1, NAG-NAG-BMA.1
8 PLIP interactions:8 interactions with chain E- Hydrogen bonds: E:E.190, E:E.190, E:Y.98, E:G.135, E:S.136, E:N.137, E:H.183, E:S.228
- Hydrophobic interactions: E:W.153, E:T.155
BGC-GAL-SIA.9: 17 residues within 4Å:- Chain A: R.208
- Chain E: T.65, D.68, E.89, S.95, Y.100, D.101, V.102, P.103, Y.105, A.106, R.109, R.269
- Chain F: E.69, F.70, S.71, E.72
11 PLIP interactions:5 interactions with chain E, 1 interactions with chain A, 5 interactions with chain F- Hydrogen bonds: E:T.65, E:Y.100, E:Y.100, E:Y.105, A:R.208, E:V.102, E:Y.105, E:R.109, E:R.269, E:R.269, F:E.69, F:S.71, F:S.71, F:E.72
- Water bridges: E:R.269
- Hydrophobic interactions: F:E.72
- 12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.10: 6 residues within 4Å:- Chain A: N.38, A.39, T.40, T.318
- Chain B: N.49, L.52
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.38, A:T.318
NAG.11: 5 residues within 4Å:- Chain A: Q.80, N.81, F.120, I.121, R.150
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.81
NAG.12: 7 residues within 4Å:- Chain A: S.45, S.46, S.47, N.285, N.296, V.297, N.298
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:V.297
- Hydrogen bonds: A:N.285, A:V.297, A:N.298
NAG.13: 5 residues within 4Å:- Chain B: A.147, E.150, S.151, N.154, T.156
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.150
NAG.14: 6 residues within 4Å:- Chain C: N.38, A.39, T.40, T.318
- Chain D: N.49, L.52
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.38, C:T.318
NAG.15: 5 residues within 4Å:- Chain C: Q.80, N.81, F.120, I.121, R.150
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.81
NAG.16: 7 residues within 4Å:- Chain C: S.45, S.46, S.47, N.285, N.296, V.297, N.298
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:V.297
- Hydrogen bonds: C:N.285, C:N.298
NAG.17: 5 residues within 4Å:- Chain D: A.147, E.150, S.151, N.154, T.156
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:E.150
NAG.18: 6 residues within 4Å:- Chain E: N.38, A.39, T.40, T.318
- Chain F: N.49, L.52
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:N.38, E:T.318
NAG.19: 5 residues within 4Å:- Chain E: Q.80, N.81, F.120, I.121, R.150
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:N.81
NAG.20: 7 residues within 4Å:- Chain E: S.45, S.46, S.47, N.285, N.296, V.297, N.298
3 PLIP interactions:3 interactions with chain E- Hydrophobic interactions: E:V.297
- Hydrogen bonds: E:N.285, E:N.298
NAG.21: 5 residues within 4Å:- Chain F: A.147, E.150, S.151, N.154, T.156
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sauter, N.K. et al., Binding of influenza virus hemagglutinin to analogs of its cell-surface receptor, sialic acid: analysis by proton nuclear magnetic resonance spectroscopy and X-ray crystallography. Biochemistry (1992)
- Release Date
- 1994-01-31
- Peptides
- HEMAGGLUTININ, CHAIN HA1: ACE
HEMAGGLUTININ, CHAIN HA2: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CE
EB
BD
DF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x BGC- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose(Post Translational Modification)
- 12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sauter, N.K. et al., Binding of influenza virus hemagglutinin to analogs of its cell-surface receptor, sialic acid: analysis by proton nuclear magnetic resonance spectroscopy and X-ray crystallography. Biochemistry (1992)
- Release Date
- 1994-01-31
- Peptides
- HEMAGGLUTININ, CHAIN HA1: ACE
HEMAGGLUTININ, CHAIN HA2: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CE
EB
BD
DF
F