SMTL ID : 1iom.1

CRYSTAL STRUCTURE OF CITRATE SYNTHASE FROM THERMUS THERMOPHILUS HB8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.137, K.142 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.137, A:R.137, A:E.143, A:G.163 Salt bridges: A:R.137, A:K.142 SO4.6: 2 residues within 4Å: Chain B: R.137, K.142 6 PLIP interactions: 6 interactions with chain B Water bridges: B:R.137, B:R.137, B:E.143, B:G.163 Salt bridges: B:R.137, B:K.142

2 x CO3: CARBONATE ION(Non-functional Binders)

CO3.2: 6 residues within 4Å: Chain A: H.184, N.187, H.219, F.333, R.337 Ligands: GOL.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.337, A:R.337 Water bridges: A:H.184, A:H.219 CO3.7: 6 residues within 4Å: Chain B: H.184, N.187, H.219, F.333, R.337 Ligands: GOL.8 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.337, B:R.337

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: H.181, H.184, H.258, R.267, D.312, F.333 Ligands: CO3.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:H.184, A:H.258, A:R.267, A:R.267 Water bridges: A:H.181, A:D.312, A:D.312 GOL.4: 9 residues within 4Å: Chain A: Y.30, L.51, H.52, G.53, R.114, L.346, E.347, E.350 Ligands: GOL.5 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.51, A:R.114, A:R.114, A:L.346 Water bridges: A:R.16, A:H.52 GOL.5: 5 residues within 4Å: Chain A: L.51, H.52, R.114, Y.118 Ligands: GOL.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.51, A:H.52, A:R.114 Water bridges: A:R.114, A:R.114, A:E.115 GOL.8: 7 residues within 4Å: Chain B: H.181, H.184, H.258, R.267, D.312, F.333 Ligands: CO3.7 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:H.258, B:R.267, B:R.267 Water bridges: B:H.181, B:H.258, B:D.312, B:D.312 GOL.9: 9 residues within 4Å: Chain B: Y.30, L.51, H.52, G.53, R.114, L.346, E.347, E.350 Ligands: GOL.10 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:L.51, B:R.114, B:R.114, B:L.346, B:E.350 Water bridges: B:R.16, B:H.52 GOL.10: 5 residues within 4Å: Chain B: L.51, H.52, R.114, Y.118 Ligands: GOL.9 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.51, B:R.114 Water bridges: B:R.114, B:R.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kanamori, E. et al., Structural comparison between the open and closed forms of citrate synthase from Thermus thermophilus HB8. Biophys Physicobio. (2015)

Release Date

2003-07-29

Peptides

CITRATE SYNTHASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

CITRATE SYNTHASE

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