SMTL ID : 1ixy.2 (1 other biounit)

Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain C: E.22, E.163 Ligands: UDP.3 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.163, H2O.5, H2O.5, H2O.5 MG.2: 2 residues within 4Å: Chain C: E.305, R.309 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.305, H2O.5, H2O.5, H2O.5

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.3: 18 residues within 4Å: Chain C: V.18, G.187, G.188, S.189, R.191, R.195, F.213, G.214, K.237, I.238, M.240, V.243, Y.261, T.267, L.268, R.269, E.272 Ligands: MG.1 18 PLIP interactions: 18 interactions with chain C Hydrophobic interactions: C:F.213 Hydrogen bonds: C:S.189, C:I.238, C:I.238, C:Y.261, C:E.272 Water bridges: C:D.100, C:S.189, C:R.191, C:Y.261, C:R.269, C:R.269 Salt bridges: C:R.191, C:R.191, C:R.195, C:R.195, C:R.269, C:R.269

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 5 residues within 4Å: Chain C: D.171, Q.173, N.241, M.242, E.245 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:E.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lariviere, L. et al., A Base-flipping Mechanism for the T4 Phage beta-Glucosyltransferase and Identification of a Transition-state Analog. J.Mol.Biol. (2002)

Release Date

2002-12-04

Peptides

DNA beta-glucosyltransferase: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
B

DNA beta-glucosyltransferase

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