SMTL ID : 1j39.1

Crystal Structure of T4 phage BGT in complex with its UDP-glucose substrate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

1 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)

UPG.1: 21 residues within 4Å: Chain A: V.18, E.22, T.99, Q.137, G.187, G.188, S.189, R.191, R.195, F.213, G.214, K.237, I.238, M.240, V.243, Y.261, F.265, T.267, L.268, R.269, E.272 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:F.213 Hydrogen bonds: A:E.22, A:D.100, A:Q.137, A:Q.137, A:S.189, A:I.238, A:I.238, A:Y.261, A:L.268, A:E.272 Water bridges: A:S.189, A:S.189, A:R.195, A:R.269 Salt bridges: A:R.191, A:R.195, A:R.269, A:R.269

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: T.181, L.182, E.211, K.246, Q.249 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.181, A:T.181, A:K.246 GOL.3: 6 residues within 4Å: Chain A: K.198, E.201, F.202, E.285, N.301, N.302 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.198, A:K.198, A:N.301 Water bridges: A:E.201, A:E.201 GOL.4: 3 residues within 4Å: Chain A: K.93, E.156, D.350 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lariviere, L. et al., Crystal structures of the T4 phage beta-glucosyltransferase and the D100A mutant in complex with UDP-glucose: glucose binding and identification of the catalytic base for a direct displacement mechanism. J.Mol.Biol. (2003)

Release Date

2003-08-19

Peptides

DNA beta-glucosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA beta-glucosyltransferase

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