SMTL ID : 1m5r.1 (1 other biounit)

Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 17 residues within 4Å: Chain C: V.18, G.187, G.188, S.189, R.191, R.195, F.213, G.214, K.237, I.238, M.240, V.243, Y.261, L.268, R.269, E.272 Ligands: TRS.2 19 PLIP interactions: 19 interactions with chain C Hydrophobic interactions: C:F.213 Hydrogen bonds: C:S.189, C:I.238, C:I.238, C:E.272 Water bridges: C:S.21, C:D.100, C:S.189, C:R.195, C:Y.261, C:T.267, C:R.269, C:R.269, C:R.269 Salt bridges: C:R.191, C:R.191, C:R.195, C:R.269, C:R.269

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 7 residues within 4Å: Chain C: V.18, E.22, T.99, D.100, R.191, L.268 Ligands: UDP.1 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:T.99, C:D.100, C:R.191 Water bridges: C:N.66, C:T.99, C:Q.137, C:Q.137, C:Q.137, C:L.268 TRS.3: 5 residues within 4Å: Chain C: F.160, P.161, E.340, W.341, A.344 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:E.340, C:W.341 Water bridges: C:Q.164, C:Q.164, C:E.340, C:E.340

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 4 residues within 4Å: Chain C: I.266, W.271, R.291, T.334 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:W.271 Hydrogen bonds: C:Y.159 Water bridges: C:Q.164, C:R.291, C:R.291

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lariviere, L. et al., A Base-flipping mechanism for the T4 phage beta-glucosyltransferase and identification of a transition state analog. J.Mol.Biol. (2002)

Release Date

2002-12-11

Peptides

DNA beta-glucosyltransferase: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

DNA beta-glucosyltransferase

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