SMTL ID : 1jdv.1

CRYSTAL STRUCTURE OF 5'-DEOXY-5'-METHYLTHIOADENOSINE PHOSPHORYLASE COMPLEXED WITH ADENOSINE AND SULFATE ION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: G.21, R.25, R.86, Y.87, G.88, T.89 Chain D: R.43 Ligands: ADN.2 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:G.21, A:Y.87, A:T.89 Salt bridges: A:R.25, A:R.86, D:R.43 SO4.3: 8 residues within 4Å: Chain B: G.21, R.25, R.86, Y.87, G.88, T.89 Chain C: R.43 Ligands: ADN.4 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:G.21, B:Y.87, B:T.89 Salt bridges: B:R.25, B:R.86, C:R.43 SO4.5: 6 residues within 4Å: Chain B: R.43 Chain C: G.21, R.86, Y.87, G.88, T.89 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:G.21, C:Y.87, C:T.89 Salt bridges: C:R.86, B:R.43 SO4.6: 8 residues within 4Å: Chain A: R.43 Chain D: G.21, R.25, R.86, Y.87, G.88, T.89 Ligands: ADN.7 6 PLIP interactions: 5 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:G.21, D:Y.87, D:T.89 Salt bridges: D:R.25, D:R.86, A:R.43 SO4.8: 8 residues within 4Å: Chain E: G.21, R.25, R.86, Y.87, G.88, T.89 Chain F: R.43 Ligands: ADN.9 6 PLIP interactions: 5 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:G.21, E:Y.87, E:T.89 Salt bridges: E:R.25, E:R.86, F:R.43 SO4.10: 6 residues within 4Å: Chain E: R.43 Chain F: G.21, R.86, Y.87, G.88, T.89 5 PLIP interactions: 4 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:G.21, F:Y.87, F:T.89 Salt bridges: F:R.86, E:R.43

4 x ADN: ADENOSINE(Non-covalent)

ADN.2: 14 residues within 4Å: Chain A: R.86, T.89, T.90, G.91, F.160, E.163, V.179, E.180, M.181, E.182, D.205 Chain D: H.5, R.43 Ligands: SO4.1 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain D Hydrogen bonds: A:R.86, A:T.89, A:E.180, A:M.181, A:E.182, A:D.205, D:H.5, D:R.43 ADN.4: 14 residues within 4Å: Chain B: R.86, T.89, T.90, G.91, F.160, E.163, V.179, E.180, M.181, E.182, D.205 Chain C: H.5, R.43 Ligands: SO4.3 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:R.86, B:T.89, B:M.181, B:E.182, B:D.205, C:H.5, C:R.43 ADN.7: 14 residues within 4Å: Chain A: H.5, R.43 Chain D: R.86, T.89, T.90, G.91, F.160, E.163, V.179, E.180, M.181, E.182, D.205 Ligands: SO4.6 7 PLIP interactions: 5 interactions with chain D, 2 interactions with chain A Hydrogen bonds: D:R.86, D:T.89, D:M.181, D:E.182, D:D.205, A:H.5, A:R.43 ADN.9: 15 residues within 4Å: Chain E: R.86, T.89, T.90, G.91, F.160, E.163, V.179, E.180, M.181, E.182, S.204, D.205 Chain F: H.5, R.43 Ligands: SO4.8 7 PLIP interactions: 5 interactions with chain E, 2 interactions with chain F Hydrogen bonds: E:R.86, E:M.181, E:E.182, E:S.204, E:D.205, F:H.5, F:R.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Appleby, T.C. et al., Three-dimensional structure of a hyperthermophilic 5'-deoxy-5'-methylthioadenosine phosphorylase from Sulfolobus solfataricus. J.Biol.Chem. (2001)

Release Date

2001-10-26

Peptides

5'-METHYLTHIOADENOSINE PHOSPHORYLASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

5'-METHYLTHIOADENOSINE PHOSPHORYLASE

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