SMTL ID : 1je1.1

5'-DEOXY-5'-METHYLTHIOADENOSINE PHOSPHORYLASE COMPLEX WITH GUANOSINE AND SULFATE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-hexamer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: G.21, R.25, R.86, Y.87, G.88, T.89, E.182 Chain D: R.43 Ligands: GMP.7 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:G.21, A:Y.87, A:T.89 Salt bridges: A:R.25, A:R.86, D:R.43 SO4.2: 9 residues within 4Å: Chain B: G.21, R.25, R.86, Y.87, G.88, T.89, E.182 Chain C: R.43 Ligands: GMP.8 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:G.21, B:Y.87, B:T.89 Salt bridges: B:R.25, B:R.86, C:R.43 SO4.3: 8 residues within 4Å: Chain B: R.43 Chain C: V.20, G.21, R.86, Y.87, G.88, T.89 Ligands: GMP.9 7 PLIP interactions: 6 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:G.21, C:Y.87, C:T.89 Water bridges: C:D.22, C:D.22 Salt bridges: C:R.86, B:R.43 SO4.4: 9 residues within 4Å: Chain A: R.43 Chain D: G.21, R.25, R.86, Y.87, G.88, T.89, E.182 Ligands: GMP.10 7 PLIP interactions: 6 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:G.21, D:Y.87, D:T.89 Salt bridges: D:R.25, D:H.62, D:R.86, A:R.43 SO4.5: 8 residues within 4Å: Chain E: G.21, R.86, Y.87, G.88, T.89, E.182 Chain F: R.43 Ligands: GMP.11 7 PLIP interactions: 6 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:G.21, E:Y.87, E:T.89 Water bridges: E:D.22, E:R.25 Salt bridges: E:R.86, F:R.43 SO4.6: 8 residues within 4Å: Chain E: R.43 Chain F: V.20, G.21, R.86, G.88, T.89, E.182 Ligands: GMP.12 7 PLIP interactions: 6 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:G.21, F:Y.87, F:T.89 Water bridges: F:D.22, F:D.22 Salt bridges: F:R.86, E:R.43

6 x GMP: GUANOSINE(Non-covalent)

GMP.7: 15 residues within 4Å: Chain A: I.64, R.86, T.89, T.90, G.91, S.157, F.160, E.163, V.179, E.180, M.181, E.182 Chain D: H.5, R.43 Ligands: SO4.1 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:R.86, A:E.180, A:M.181, A:E.182, D:H.5 Salt bridges: A:E.163 GMP.8: 15 residues within 4Å: Chain B: I.64, R.86, T.89, T.90, G.91, S.157, F.160, E.163, V.179, E.180, M.181, E.182 Chain C: H.5, R.43 Ligands: SO4.2 10 PLIP interactions: 8 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:R.86, B:T.89, B:E.180, B:E.180, B:M.181, B:E.182, C:H.5, C:R.43 Salt bridges: B:E.163 pi-Stacking: B:F.160 GMP.9: 16 residues within 4Å: Chain B: H.5, R.43 Chain C: I.64, R.86, T.89, T.90, G.91, S.157, F.160, E.163, V.179, E.180, M.181, E.182, L.207 Ligands: SO4.3 8 PLIP interactions: 7 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:R.86, C:T.89, C:E.180, C:E.180, C:M.181, C:E.182, B:H.5 Salt bridges: C:E.163 GMP.10: 15 residues within 4Å: Chain A: H.5, R.43 Chain D: I.64, R.86, T.89, T.90, G.91, S.157, F.160, E.163, V.179, E.180, M.181, E.182 Ligands: SO4.4 6 PLIP interactions: 5 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:R.86, D:E.180, D:M.181, D:E.182, A:H.5 Salt bridges: D:E.163 GMP.11: 15 residues within 4Å: Chain E: I.64, R.86, T.89, T.90, G.91, S.157, F.160, E.163, V.179, E.180, M.181, E.182 Chain F: H.5, R.43 Ligands: SO4.5 8 PLIP interactions: 6 interactions with chain E, 2 interactions with chain F Hydrogen bonds: E:R.86, E:S.157, E:S.157, E:M.181, E:E.182, F:H.5, F:R.43 Salt bridges: E:E.163 GMP.12: 16 residues within 4Å: Chain E: H.5, R.43 Chain F: I.64, R.86, T.89, T.90, G.91, S.157, F.160, E.163, V.179, E.180, M.181, E.182, L.207 Ligands: SO4.6 5 PLIP interactions: 4 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:R.86, F:M.181, F:E.182, E:R.43 Salt bridges: F:E.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Appleby, T.C. et al., Three-dimensional structure of a hyperthermophilic 5'-deoxy-5'-methylthioadenosine phosphorylase from Sulfolobus solfataricus. J.Biol.Chem. (2001)

Release Date

2001-10-26

Peptides

5'-METHYLTHIOADENOSINE PHOSPHORYLASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

5'-METHYLTHIOADENOSINE PHOSPHORYLASE

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