SMTL ID : 1jsd.2 (1 other biounit)

CRYSTAL STRUCTURE OF SWINE H9 HAEMAGGLUTININ

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-3-3-mer

Ligands

12 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: I.121, W.122, N.123, I.153, Q.154, D.155 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain A: V.269, Q.271, N.280 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain A: T.35, R.276, N.287, K.303 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 5 residues within 4Å: Chain B: Q.147, E.150, T.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 6 residues within 4Å: Chain C: I.121, W.122, N.123, I.153, Q.154, D.155 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 3 residues within 4Å: Chain C: V.269, Q.271, N.280 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 4 residues within 4Å: Chain C: T.35, R.276, N.287, K.303 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 5 residues within 4Å: Chain D: Q.147, E.150, T.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.13: 6 residues within 4Å: Chain E: I.121, W.122, N.123, I.153, Q.154, D.155 No protein-ligand interaction detected (PLIP) NAG-NAG.14: 3 residues within 4Å: Chain E: V.269, Q.271, N.280 No protein-ligand interaction detected (PLIP) NAG-NAG.15: 4 residues within 4Å: Chain E: T.35, R.276, N.287, K.303 No protein-ligand interaction detected (PLIP) NAG-NAG.16: 5 residues within 4Å: Chain F: Q.147, E.150, T.151, N.154, T.156 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 1 residues within 4Å: Chain A: N.11 No protein-ligand interaction detected (PLIP) NAG.11: 1 residues within 4Å: Chain C: N.11 No protein-ligand interaction detected (PLIP) NAG.17: 1 residues within 4Å: Chain E: N.11 No protein-ligand interaction detected (PLIP)

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.6: 8 residues within 4Å: Chain B: L.102, K.106 Chain D: L.102, K.106 Chain F: L.102, K.106 Ligands: PO4.12, PO4.18 5 PLIP interactions: 2 interactions with chain B, 1 interactions with chain F, 2 interactions with chain D Water bridges: B:L.102, D:K.106 Salt bridges: B:K.106, F:K.106, D:K.106 PO4.12: 8 residues within 4Å: Chain B: L.102, K.106 Chain D: L.102, K.106 Chain F: L.102, K.106 Ligands: PO4.6, PO4.18 5 PLIP interactions: 2 interactions with chain D, 1 interactions with chain B, 2 interactions with chain F Water bridges: D:L.102, F:K.106 Salt bridges: D:K.106, B:K.106, F:K.106 PO4.18: 8 residues within 4Å: Chain B: L.102, K.106 Chain D: L.102, K.106 Chain F: L.102, K.106 Ligands: PO4.6, PO4.12 5 PLIP interactions: 2 interactions with chain B, 2 interactions with chain F, 1 interactions with chain D Water bridges: B:K.106, F:L.102 Salt bridges: B:K.106, F:K.106, D:K.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ha, Y. et al., H5 avian and H9 swine influenza virus haemagglutinin structures: possible origin of influenza subtypes. EMBO J. (2002)

Release Date

2001-09-26

Peptides

HAEMAGGLUTININ (HA1 CHAIN): ACE
HAEMAGGLUTININ (HA2 CHAIN): BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

HAEMAGGLUTININ (HA1 CHAIN)

HAEMAGGLUTININ (HA2 CHAIN)

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