SMTL ID : 1jsh.1 (1 other biounit)

CRYSTAL STRUCTURE OF H9 HAEMAGGLUTININ COMPLEXED WITH LSTA RECEPTOR ANALOG

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: I.121, N.123, I.153, Q.154, D.155, A.156 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain A: T.35, R.276, N.287, K.303 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 5 residues within 4Å: Chain B: Q.147, E.150, T.151, N.154, T.156 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-NAG.2: 3 residues within 4Å: Chain A: N.45, V.269, N.280 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.45

1 x GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose(Non-covalent)

GAL-SIA.4: 12 residues within 4Å: Chain A: Y.91, G.128, T.129, S.130, S.131, W.143, T.145, P.176, V.180, L.184, G.215, L.216 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.131, A:S.131, A:G.215, A:Y.91, A:T.129, A:S.131 Hydrophobic interactions: A:W.143, A:T.145

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 1 residues within 4Å: Chain A: N.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ha, Y. et al., X-ray structures of H5 avian and H9 swine influenza virus hemagglutinins bound to avian and human receptor analogs. Proc.Natl.Acad.Sci.USA (2001)

Release Date

2001-09-26

Peptides

HAEMAGGLUTININ (HA1 CHAIN): A
HAEMAGGLUTININ (HA2 CHAIN): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HAEMAGGLUTININ (HA1 CHAIN)

HAEMAGGLUTININ (HA2 CHAIN)

Related Entries With Identical Sequence