SMTL ID : 1jsn.1

STRUCTURE OF AVIAN H5 HAEMAGGLUTININ COMPLEXED WITH LSTA RECEPTRO ANALOG

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.165, N.236, A.238 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 2 residues within 4Å: Chain B: E.150, N.154 No protein-ligand interaction detected (PLIP)

1 x NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-GAL-SIA.2: 13 residues within 4Å: Chain A: Y.91, S.129, G.130, V.131, S.132, S.133, W.149, I.151, H.179, N.182, E.186, L.190, Q.222 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Q.222, A:Q.222, A:Y.91, A:V.131, A:S.133, A:H.179, A:N.182, A:Q.222, A:Q.222 Water bridges: A:N.182, A:D.183, A:S.223, A:S.141 Hydrophobic interactions: A:W.149, A:I.151

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain A: N.11 No protein-ligand interaction detected (PLIP) NAG.5: 3 residues within 4Å: Chain A: Q.15, K.22, N.23 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.22 Hydrogen bonds: A:Q.15 Water bridges: A:N.23, A:N.23, A:N.23 NAG.6: 2 residues within 4Å: Chain A: N.275, N.286 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ha, Y. et al., X-ray structures of H5 avian and H9 swine influenza virus hemagglutinins bound to avian and human receptor analogs. Proc.Natl.Acad.Sci.USA (2001)

Release Date

2001-09-26

Peptides

HAEMAGGLUTININ (HA1 CHAIN): A
HAEMAGGLUTININ (HA2 CHAIN): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HAEMAGGLUTININ (HA1 CHAIN)

HAEMAGGLUTININ (HA2 CHAIN)

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