SMTL ID : 1k39.1

The structure of yeast delta3-delta2-enoyl-COA isomerase complexed with octanoyl-COA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.29 Å

Oligo State

homo-hexamer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: Y.225, P.227 Chain B: K.257, Y.258, D.261 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.258 PO4.2: 4 residues within 4Å: Chain A: K.257, Y.258 Chain C: Y.225, P.227 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.261 PO4.5: 4 residues within 4Å: Chain B: Y.225, P.227 Chain C: K.257, Y.258 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.225, B:Y.225 PO4.7: 5 residues within 4Å: Chain D: Y.225, P.227 Chain E: K.257, Y.258, D.261 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain D Hydrogen bonds: E:Y.258, D:Y.225 PO4.8: 4 residues within 4Å: Chain D: K.257, Y.258 Chain F: Y.225, P.227 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:Y.225 PO4.11: 4 residues within 4Å: Chain E: Y.225, P.227 Chain F: K.257, Y.258 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:Y.225, E:Y.225, E:Y.225

6 x CO8: OCTANOYL-COENZYME A(Non-covalent)

CO8.3: 24 residues within 4Å: Chain A: D.28, N.29, L.30, A.32, G.35, F.65, S.68, G.69, A.70, D.71, F.72, I.75, N.96, F.97, R.100, N.101, I.124, G.125, L.126, L.153, L.155, E.158, F.268, L.271 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.65, A:I.75, A:F.97, A:F.97, A:R.100, A:I.124, A:I.124, A:L.155, A:F.268 Hydrogen bonds: A:S.68, A:S.68, A:A.70, A:F.72, A:L.126 CO8.4: 23 residues within 4Å: Chain B: N.29, L.30, A.32, F.65, S.68, G.69, A.70, D.71, F.72, K.73, I.75, N.96, F.97, R.100, N.101, I.124, G.125, L.126, L.153, L.155, E.158, W.259, F.268 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:F.65, B:I.75, B:F.97, B:F.97, B:R.100, B:I.124, B:I.124, B:L.155, B:W.259 Hydrogen bonds: B:S.68, B:S.68, B:A.70, B:L.126 Salt bridges: B:K.73 CO8.6: 23 residues within 4Å: Chain C: D.28, N.29, L.30, A.32, G.35, S.68, G.69, A.70, D.71, F.72, K.73, N.96, F.97, R.100, N.101, I.124, G.125, L.126, L.153, L.155, E.158, W.259, F.268 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:F.97, C:F.97, C:R.100, C:I.124, C:I.124, C:L.155, C:W.259 Hydrogen bonds: C:S.68, C:S.68, C:A.70, C:F.72, C:K.73, C:L.126 Salt bridges: C:K.73 pi-Stacking: C:F.72 CO8.9: 24 residues within 4Å: Chain D: D.28, N.29, L.30, A.32, G.35, F.65, S.68, G.69, A.70, D.71, F.72, I.75, N.96, F.97, R.100, N.101, I.124, G.125, L.126, L.153, L.155, E.158, F.268, L.271 15 PLIP interactions: 15 interactions with chain D Hydrophobic interactions: D:F.65, D:I.75, D:F.97, D:F.97, D:R.100, D:I.124, D:I.124, D:L.155, D:F.268 Hydrogen bonds: D:S.68, D:S.68, D:A.70, D:D.71, D:F.72, D:L.126 CO8.10: 23 residues within 4Å: Chain E: N.29, L.30, A.32, F.65, S.68, G.69, A.70, D.71, F.72, K.73, I.75, N.96, F.97, R.100, N.101, I.124, G.125, L.126, L.153, L.155, E.158, W.259, F.268 16 PLIP interactions: 16 interactions with chain E Hydrophobic interactions: E:F.65, E:I.75, E:F.97, E:F.97, E:R.100, E:I.124, E:I.124, E:L.155, E:W.259 Hydrogen bonds: E:S.68, E:S.68, E:A.70, E:D.71, E:F.72, E:L.126 Salt bridges: E:K.73 CO8.12: 23 residues within 4Å: Chain F: D.28, N.29, L.30, A.32, G.35, S.68, G.69, A.70, D.71, F.72, K.73, N.96, F.97, R.100, N.101, I.124, G.125, L.126, L.153, L.155, E.158, W.259, F.268 16 PLIP interactions: 16 interactions with chain F Hydrophobic interactions: F:F.97, F:F.97, F:R.100, F:I.124, F:I.124, F:L.155, F:W.259 Hydrogen bonds: F:S.68, F:S.68, F:A.70, F:D.71, F:F.72, F:K.73, F:L.126 Salt bridges: F:K.73 pi-Stacking: F:F.72

Links

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Citation

 - 

Release Date

2003-08-05

Peptides

d3,d2-enoyl CoA isomerase ECI1: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

d3,d2-enoyl CoA isomerase ECI1

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