SMTL ID : 1k6t.1

LACK OF SYNERGY FOR INHIBITORS TARGETING A MULTI-DRUG RESISTANT HIV-1 PROTEASE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 1 residues within 4Å: Chain A: P.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.1 ACT.2: 4 residues within 4Å: Chain A: W.6, K.7, R.8 Chain B: R.87 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain A Water bridges: B:R.87, B:R.87 Salt bridges: B:R.87, A:K.7 Hydrophobic interactions: A:K.7, A:R.8 Hydrogen bonds: A:R.8 ACT.3: 2 residues within 4Å: Chain A: G.16, G.17 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.17 Water bridges: A:G.16, A:G.16 Salt bridges: A:R.14 ACT.4: 2 residues within 4Å: Chain B: P.1, H.69 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:P.1 Salt bridges: B:H.69

1 x XN1: N-[2-HYDROXY-1-INDANYL]-5-[(2-TERTIARYBUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4-HYDROXY-2-(1-PHENYLETHYL)-PEN TANAMIDE(Non-covalent)

XN1.5: 21 residues within 4Å: Chain A: R.8, D.25, G.27, A.28, V.32, G.48, G.49, I.50, P.81, V.84 Chain B: D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, P.81, T.82 20 PLIP interactions: 8 interactions with chain A, 12 interactions with chain B Hydrophobic interactions: A:A.28, A:V.32, A:I.50, A:P.81, A:V.84, B:A.28, B:D.30, B:V.32, B:I.47, B:P.81 Water bridges: A:G.27, A:D.29, B:I.50 Salt bridges: A:D.25, B:D.25 Hydrogen bonds: B:D.25, B:G.27, B:G.27, B:G.27, B:D.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

King, N.M. et al., Lack of synergy for inhibitors targeting a multi-drug-resistant HIV-1 protease. Protein Sci. (2002)

Release Date

2002-02-06

Peptides

POL polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

POL polyprotein

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