SMTL ID : 1ken.1

INFLUENZA VIRUS HEMAGGLUTININ COMPLEXED WITH AN ANTIBODY THAT PREVENTS THE HEMAGGLUTININ LOW PH FUSOGENIC TRANSITION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

hetero-3-3-2-2-mer

Ligands

3 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.1: 7 residues within 4Å: Chain A: N.165, T.167, V.242 Chain E: T.187, S.219, P.221, W.222 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain A Hydrogen bonds: E:W.222 Hydrophobic interactions: A:V.242 NAG-NAG-MAN.2: 14 residues within 4Å: Chain A: T.187, S.219, P.221, W.222 Chain C: N.165, T.167, V.242 Chain H: Y.27, S.31, G.32, Y.34, Y.54, Y.100, Y.101 3 PLIP interactions: 1 interactions with chain H, 1 interactions with chain C, 1 interactions with chain A Hydrogen bonds: H:Y.34, A:W.222 Hydrophobic interactions: C:V.242 NAG-NAG-MAN.3: 12 residues within 4Å: Chain C: T.187, S.219, W.222 Chain E: N.165, T.167 Chain J: Y.27, S.31, G.32, Y.34, Y.54, Y.100, Y.101 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:W.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barbey-Martin, C. et al., An Antibody that Prevents the Hemagglutinin Low pH Fusogenic Transition. VIROLOGY (2002)

Release Date

2002-04-24

Peptides

hemagglutinin HA1: ACE
hemagglutinin HA2: BDF
influenza virus infectivity neutralizing antibody (light chain): GI
influenza virus infectivity neutralizing antibody (heavy chain): HJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

G
L

I
U

H
H

J
T

hemagglutinin HA1

hemagglutinin HA2

influenza virus infectivity neutralizing antibody (light chain)

influenza virus infectivity neutralizing antibody (heavy chain)

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