SMTL ID : 1khf.1

PEPCK complex with PEP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: K.247, H.267, D.314 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.267, A:D.314, H2O.2, H2O.4, H2O.4

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: A.89, N.406 Ligands: PEP.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.406, A:N.406

1 x PEP: PHOSPHOENOLPYRUVATE(Non-functional Binders)

PEP.3: 11 residues within 4Å: Chain A: A.89, R.90, Y.238, G.239, G.240, K.247, F.336, N.406, R.408, F.488 Ligands: NA.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.90, A:G.240, A:N.406 Water bridges: A:R.90, A:R.408 Salt bridges: A:R.90, A:R.408, A:R.408

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: A.450, S.452, W.453, P.512, K.513, I.514 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.450, A:P.512, A:I.514 Water bridges: A:K.513 EDO.5: 6 residues within 4Å: Chain A: Y.75, I.351, Q.355, V.371, I.376, E.378 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.75, A:Q.355, A:E.378 Water bridges: A:Y.75, A:I.354

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dunten, P. et al., Crystal structure of human cytosolic phosphoenolpyruvate carboxykinase reveals a new GTP-binding site. J.Mol.Biol. (2002)

Release Date

2002-02-27

Peptides

Phosphoenolpyruvate Carboxykinase, cytosolic (GTP): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphoenolpyruvate Carboxykinase, cytosolic (GTP)

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