- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x FE2: FE (II) ION(Non-covalent)
- 8 x BPY: BIPHENYL-2,3-DIOL(Non-covalent)
BPY.2: 14 residues within 4Å:- Chain A: H.145, I.172, I.174, F.186, H.194, F.201, H.208, H.209, H.240, N.242, Y.249, E.260, T.280
- Ligands: FE2.1
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:I.172, A:I.174, A:F.186, A:F.186, A:F.201
- pi-Stacking: A:H.240
BPY.6: 14 residues within 4Å:- Chain B: H.145, I.172, I.174, F.186, H.194, F.201, H.208, H.209, H.240, N.242, Y.249, E.260, T.280
- Ligands: FE2.5
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:I.172, B:I.174, B:F.186, B:F.186, B:F.201
- pi-Stacking: B:H.240
BPY.10: 14 residues within 4Å:- Chain C: H.145, I.172, I.174, F.186, H.194, F.201, H.208, H.209, H.240, N.242, Y.249, E.260, T.280
- Ligands: FE2.9
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:I.172, C:I.174, C:F.186, C:F.186, C:F.201
- pi-Stacking: C:H.240
BPY.14: 14 residues within 4Å:- Chain D: H.145, I.172, I.174, F.186, H.194, F.201, H.208, H.209, H.240, N.242, Y.249, E.260, T.280
- Ligands: FE2.13
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:I.172, D:I.174, D:F.186, D:F.186, D:F.201
- pi-Stacking: D:H.240
BPY.18: 14 residues within 4Å:- Chain E: H.145, I.172, I.174, F.186, H.194, F.201, H.208, H.209, H.240, N.242, Y.249, E.260, T.280
- Ligands: FE2.17
7 PLIP interactions:7 interactions with chain E- Hydrophobic interactions: E:I.172, E:I.174, E:F.186, E:F.186, E:F.201
- Hydrogen bonds: E:Y.249
- pi-Stacking: E:H.240
BPY.22: 14 residues within 4Å:- Chain F: H.145, I.172, I.174, F.186, H.194, F.201, H.208, H.209, H.240, N.242, Y.249, E.260, T.280
- Ligands: FE2.21
7 PLIP interactions:7 interactions with chain F- Hydrophobic interactions: F:I.172, F:I.174, F:F.186, F:F.186, F:F.201
- Hydrogen bonds: F:Y.249
- pi-Stacking: F:H.240
BPY.26: 14 residues within 4Å:- Chain G: H.145, I.172, I.174, F.186, H.194, F.201, H.208, H.209, H.240, N.242, Y.249, E.260, T.280
- Ligands: FE2.25
7 PLIP interactions:7 interactions with chain G- Hydrophobic interactions: G:I.172, G:I.174, G:F.186, G:F.186, G:F.201
- Hydrogen bonds: G:Y.249
- pi-Stacking: G:H.240
BPY.30: 14 residues within 4Å:- Chain H: H.145, I.172, I.174, F.186, H.194, F.201, H.208, H.209, H.240, N.242, Y.249, E.260, T.280
- Ligands: FE2.29
9 PLIP interactions:9 interactions with chain H- Hydrophobic interactions: H:I.172, H:I.174, H:F.186, H:F.186, H:F.201
- Hydrogen bonds: H:H.209, H:Y.249, H:E.260
- pi-Stacking: H:H.240
- 16 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.3: 6 residues within 4Å:- Chain A: P.126, F.127
- Chain F: P.132, V.133, S.134, D.219
Ligand excluded by PLIPMPD.4: 5 residues within 4Å:- Chain A: F.224, D.228
- Chain H: L.236, K.286, V.288
Ligand excluded by PLIPMPD.7: 6 residues within 4Å:- Chain B: P.126, F.127
- Chain E: P.132, V.133, S.134, D.219
Ligand excluded by PLIPMPD.8: 5 residues within 4Å:- Chain B: F.224, D.228
- Chain G: L.236, K.286, V.288
Ligand excluded by PLIPMPD.11: 6 residues within 4Å:- Chain C: P.126, F.127
- Chain G: P.132, V.133, S.134, D.219
Ligand excluded by PLIPMPD.12: 5 residues within 4Å:- Chain C: F.224, D.228
- Chain F: L.236, K.286, V.288
Ligand excluded by PLIPMPD.15: 6 residues within 4Å:- Chain D: P.126, F.127
- Chain H: P.132, V.133, S.134, D.219
Ligand excluded by PLIPMPD.16: 5 residues within 4Å:- Chain D: F.224, D.228
- Chain E: L.236, K.286, V.288
Ligand excluded by PLIPMPD.19: 6 residues within 4Å:- Chain B: P.132, V.133, S.134, D.219
- Chain E: P.126, F.127
Ligand excluded by PLIPMPD.20: 5 residues within 4Å:- Chain D: L.236, K.286, V.288
- Chain E: F.224, D.228
Ligand excluded by PLIPMPD.23: 6 residues within 4Å:- Chain A: P.132, V.133, S.134, D.219
- Chain F: P.126, F.127
Ligand excluded by PLIPMPD.24: 5 residues within 4Å:- Chain C: L.236, K.286, V.288
- Chain F: F.224, D.228
Ligand excluded by PLIPMPD.27: 6 residues within 4Å:- Chain C: P.132, V.133, S.134, D.219
- Chain G: P.126, F.127
Ligand excluded by PLIPMPD.28: 5 residues within 4Å:- Chain B: L.236, K.286, V.288
- Chain G: F.224, D.228
Ligand excluded by PLIPMPD.31: 6 residues within 4Å:- Chain D: P.132, V.133, S.134, D.219
- Chain H: P.126, F.127
Ligand excluded by PLIPMPD.32: 5 residues within 4Å:- Chain A: L.236, K.286, V.288
- Chain H: F.224, D.228
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sato, N. et al., Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase. J.Mol.Biol. (2002)
- Release Date
- 2003-01-28
- Peptides
- 2,3-Dihydroxybiphenyl dioxygenase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
BE
BF
BG
BH
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x FE2: FE (II) ION(Non-covalent)
- 8 x BPY: BIPHENYL-2,3-DIOL(Non-covalent)
- 16 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sato, N. et al., Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase. J.Mol.Biol. (2002)
- Release Date
- 2003-01-28
- Peptides
- 2,3-Dihydroxybiphenyl dioxygenase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
BE
BF
BG
BH
B