- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x FE2: FE (II) ION(Non-covalent)
- 8 x NO: NITRIC OXIDE(Non-covalent)
NO.2: 9 residues within 4Å:- Chain A: H.145, V.147, F.186, H.194, A.197, H.209, E.260
- Ligands: FE2.1, BPY.3
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.194
NO.5: 9 residues within 4Å:- Chain B: H.145, V.147, F.186, H.194, A.197, H.209, E.260
- Ligands: FE2.4, BPY.6
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:H.194
NO.8: 9 residues within 4Å:- Chain C: H.145, V.147, F.186, H.194, A.197, H.209, E.260
- Ligands: FE2.7, BPY.9
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:H.194
NO.11: 9 residues within 4Å:- Chain D: H.145, V.147, F.186, H.194, A.197, H.209, E.260
- Ligands: FE2.10, BPY.12
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:H.194
NO.14: 9 residues within 4Å:- Chain E: H.145, V.147, F.186, H.194, A.197, H.209, E.260
- Ligands: FE2.13, BPY.15
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:H.194
NO.17: 9 residues within 4Å:- Chain F: H.145, V.147, F.186, H.194, A.197, H.209, E.260
- Ligands: FE2.16, BPY.18
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:H.194
NO.20: 9 residues within 4Å:- Chain G: H.145, V.147, F.186, H.194, A.197, H.209, E.260
- Ligands: FE2.19, BPY.21
1 PLIP interactions:1 interactions with chain G- Hydrogen bonds: G:H.194
NO.23: 9 residues within 4Å:- Chain H: H.145, V.147, F.186, H.194, A.197, H.209, E.260
- Ligands: FE2.22, BPY.24
1 PLIP interactions:1 interactions with chain H- Hydrogen bonds: H:H.194
- 8 x BPY: BIPHENYL-2,3-DIOL(Non-covalent)
BPY.3: 14 residues within 4Å:- Chain A: H.145, I.172, F.186, H.194, F.201, H.208, H.209, H.240, N.242, Y.249, E.260, T.280
- Ligands: FE2.1, NO.2
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:I.172, A:F.186, A:F.186, A:F.201, A:T.280
- pi-Stacking: A:H.240
BPY.6: 14 residues within 4Å:- Chain B: H.145, I.172, F.186, H.194, F.201, H.208, H.209, H.240, N.242, Y.249, E.260, T.280
- Ligands: FE2.4, NO.5
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:I.172, B:F.186, B:F.186, B:F.201, B:T.280
- pi-Stacking: B:H.240
BPY.9: 14 residues within 4Å:- Chain C: H.145, I.172, F.186, H.194, F.201, H.208, H.209, H.240, N.242, Y.249, E.260, T.280
- Ligands: FE2.7, NO.8
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:I.172, C:F.186, C:F.186, C:F.201, C:T.280
- pi-Stacking: C:H.240
BPY.12: 14 residues within 4Å:- Chain D: H.145, I.172, F.186, H.194, F.201, H.208, H.209, H.240, N.242, Y.249, E.260, T.280
- Ligands: FE2.10, NO.11
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:I.172, D:F.186, D:F.186, D:F.201, D:T.280
- pi-Stacking: D:H.240
BPY.15: 14 residues within 4Å:- Chain E: H.145, I.172, F.186, H.194, F.201, H.208, H.209, H.240, N.242, Y.249, E.260, T.280
- Ligands: FE2.13, NO.14
7 PLIP interactions:7 interactions with chain E- Hydrophobic interactions: E:I.172, E:F.186, E:F.186, E:F.201, E:T.280
- Hydrogen bonds: E:Y.249
- pi-Stacking: E:H.240
BPY.18: 14 residues within 4Å:- Chain F: H.145, I.172, F.186, H.194, F.201, H.208, H.209, H.240, N.242, Y.249, E.260, T.280
- Ligands: FE2.16, NO.17
7 PLIP interactions:7 interactions with chain F- Hydrophobic interactions: F:I.172, F:F.186, F:F.186, F:F.201, F:T.280
- Hydrogen bonds: F:Y.249
- pi-Stacking: F:H.240
BPY.21: 14 residues within 4Å:- Chain G: H.145, I.172, F.186, H.194, F.201, H.208, H.209, H.240, N.242, Y.249, E.260, T.280
- Ligands: FE2.19, NO.20
7 PLIP interactions:7 interactions with chain G- Hydrophobic interactions: G:I.172, G:F.186, G:F.186, G:F.201, G:T.280
- Hydrogen bonds: G:Y.249
- pi-Stacking: G:H.240
BPY.24: 14 residues within 4Å:- Chain H: H.145, I.172, F.186, H.194, F.201, H.208, H.209, H.240, N.242, Y.249, E.260, T.280
- Ligands: FE2.22, NO.23
7 PLIP interactions:7 interactions with chain H- Hydrophobic interactions: H:I.172, H:F.186, H:F.186, H:F.201, H:T.280
- Hydrogen bonds: H:Y.249
- pi-Stacking: H:H.240
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sato, N. et al., Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase. J.Mol.Biol. (2002)
- Release Date
- 2003-01-29
- Peptides
- 2,3-Dihydroxybiphenyl dioxygenase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
BE
BF
BG
BH
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x FE2: FE (II) ION(Non-covalent)
- 8 x NO: NITRIC OXIDE(Non-covalent)
- 8 x BPY: BIPHENYL-2,3-DIOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sato, N. et al., Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase. J.Mol.Biol. (2002)
- Release Date
- 2003-01-29
- Peptides
- 2,3-Dihydroxybiphenyl dioxygenase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
BE
BF
BG
BH
B