- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x K: POTASSIUM ION(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.2: 5 residues within 4Å:- Chain A: A.95, T.98, P.99, P.100, L.102
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.98, A:L.102, A:L.102
- Water bridges: A:G.101
NA.5: 5 residues within 4Å:- Chain B: A.95, T.98, P.99, P.100, L.102
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.98, B:T.98, B:L.102
- Water bridges: B:G.101
NA.8: 5 residues within 4Å:- Chain C: A.95, T.98, P.99, P.100, L.102
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:T.98, C:L.102
- Water bridges: C:G.101
NA.11: 5 residues within 4Å:- Chain D: A.95, T.98, P.99, P.100, L.102
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:A.95, D:L.102
- Water bridges: D:G.101
- 4 x HCP: 1-[((1E)-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYLENE)AMINO]CYCLOPENTYLPHOSPHONIC ACID(Non-covalent)
HCP.3: 19 residues within 4Å:- Chain A: Q.52, M.53, T.110, G.111, A.112, N.115, W.138, H.139, G.140, E.210, S.215, D.243, A.245, Q.246, K.272, R.406
- Chain C: Y.301, T.302, T.303
22 PLIP interactions:16 interactions with chain A, 6 interactions with chain C- Hydrophobic interactions: A:W.138, A:E.210, A:K.272, C:Y.301
- Hydrogen bonds: A:Q.52, A:Q.52, A:G.111, A:A.112, A:N.115, A:S.215, A:Q.246, A:K.272, A:R.406, A:R.406, C:T.303, C:T.303
- Water bridges: A:W.138, A:M.141, A:E.210, C:T.303, C:T.303, C:H.304
HCP.6: 19 residues within 4Å:- Chain B: Q.52, M.53, T.110, G.111, A.112, N.115, W.138, H.139, G.140, E.210, S.215, D.243, A.245, Q.246, K.272, R.406
- Chain D: Y.301, T.302, T.303
22 PLIP interactions:6 interactions with chain D, 16 interactions with chain B- Hydrophobic interactions: D:Y.301, B:W.138, B:E.210, B:K.272
- Hydrogen bonds: D:T.303, D:T.303, B:Q.52, B:Q.52, B:G.111, B:A.112, B:N.115, B:S.215, B:Q.246, B:K.272, B:R.406, B:R.406
- Water bridges: D:T.303, D:T.303, D:H.304, B:W.138, B:M.141, B:E.210
HCP.9: 19 residues within 4Å:- Chain A: Y.301, T.302, T.303
- Chain C: Q.52, M.53, T.110, G.111, A.112, N.115, W.138, H.139, G.140, E.210, S.215, D.243, A.245, Q.246, K.272, R.406
22 PLIP interactions:17 interactions with chain C, 5 interactions with chain A- Hydrophobic interactions: C:W.138, C:E.210, C:K.272, A:Y.301
- Hydrogen bonds: C:Q.52, C:Q.52, C:G.111, C:A.112, C:N.115, C:S.215, C:Q.246, C:K.272, C:R.406, C:R.406, A:T.303, A:T.303, A:T.303
- Water bridges: C:T.110, C:W.138, C:M.141, C:E.210, A:H.304
HCP.12: 19 residues within 4Å:- Chain B: Y.301, T.302, T.303
- Chain D: Q.52, M.53, T.110, G.111, A.112, N.115, W.138, H.139, G.140, E.210, S.215, D.243, A.245, Q.246, K.272, R.406
22 PLIP interactions:17 interactions with chain D, 5 interactions with chain B- Hydrophobic interactions: D:W.138, D:E.210, D:K.272, B:Y.301
- Hydrogen bonds: D:Q.52, D:Q.52, D:G.111, D:A.112, D:N.115, D:S.215, D:Q.246, D:K.272, D:R.406, D:R.406, B:T.303, B:T.303, B:T.303
- Water bridges: D:T.110, D:W.138, D:M.141, D:E.210, B:H.304
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, W. et al., Aminophosphonate Inhibitors of Dialkylglycine Decarboxylase: Structural Basis for Slow Binding Inhibition. Biochemistry (2002)
- Release Date
- 2002-10-23
- Peptides
- 2,2-Dialkylglycine decarboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x K: POTASSIUM ION(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 4 x HCP: 1-[((1E)-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYLENE)AMINO]CYCLOPENTYLPHOSPHONIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, W. et al., Aminophosphonate Inhibitors of Dialkylglycine Decarboxylase: Structural Basis for Slow Binding Inhibition. Biochemistry (2002)
- Release Date
- 2002-10-23
- Peptides
- 2,2-Dialkylglycine decarboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A