SMTL ID : 1mb4.1

Crystal structure of aspartate semialdehyde dehydrogenase from vibrio cholerae with NADP and S-methyl-l-cysteine sulfoxide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-dimer

Ligands

2 x CYS: CYSTEINE(Non-covalent)

CYS.1: 10 residues within 4Å: Chain A: N.133, C.134, Q.161, G.165, I.229, E.240, R.267, H.274, Q.350 Ligands: NDP.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.161, A:E.240 Water bridges: A:E.240, A:K.243 Salt bridges: A:R.267, A:H.274 CYS.3: 10 residues within 4Å: Chain B: N.133, C.134, Q.161, G.165, I.229, E.240, R.267, H.274, Q.350 Ligands: NDP.4 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.161, B:E.240 Water bridges: B:K.243 Salt bridges: B:R.267, B:H.274

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.2: 21 residues within 4Å: Chain A: G.7, R.9, G.10, M.11, V.12, S.35, T.36, S.37, C.71, Q.72, G.73, G.74, A.96, A.97, S.164, G.165, Q.350, L.351, G.354, A.355 Ligands: CYS.1 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:V.12, A:A.355 Hydrogen bonds: A:G.7, A:R.9, A:R.9, A:G.10, A:M.11, A:V.12, A:T.36, A:T.36, A:S.37, A:Q.72, A:G.74, A:S.164 Water bridges: A:G.7, A:G.7, A:R.9, A:G.13, A:S.98, A:S.98 Salt bridges: A:R.9 pi-Cation interactions: A:R.9, A:R.9 NDP.4: 23 residues within 4Å: Chain A: P.192 Chain B: G.7, R.9, G.10, M.11, V.12, S.35, T.36, S.37, C.71, Q.72, G.73, G.74, A.96, A.97, C.134, S.164, G.165, Q.350, L.351, G.354, A.355 Ligands: CYS.3 25 PLIP interactions: 24 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:V.12, B:A.355 Hydrogen bonds: B:G.7, B:R.9, B:G.10, B:M.11, B:V.12, B:T.36, B:T.36, B:S.37, B:Q.38, B:Q.72, B:G.74, B:S.164, B:Q.350, A:P.192 Water bridges: B:G.7, B:R.9, B:R.9, B:R.9, B:G.13, B:S.98, B:S.98 Salt bridges: B:R.9 pi-Cation interactions: B:R.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blanco, J. et al., A structural Basis for the Mechanism of Aspartate-beta-semialdehyde Dehydrogenase from Vibrio Cholerae. Protein Sci. (2003)

Release Date

2003-01-07

Peptides

Aspartate-Semialdehyde Dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aspartate-Semialdehyde Dehydrogenase

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